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AAT Bioquest

XFD647 Alkyne

Product key features

  • Ex/Em: 650/671 nm
  • Extinction coefficient: 270,000 cm-1M-1
  • Reactive Group: Alkyne
  • Efficient Conjugation: Click chemistry labeling of azides on peptides, antibodies, and other biomolecules
  • Bright & Stable: Delivers intense fluorescence with resilience to photobleaching and pH variations from 4 to 10
  • Hydrophilic: Minimizes aggregation, enhancing signal clarity for advanced imaging and live-cell studies

Product description

XFD647, manufactured by AAT Bioquest, is a bright far-red flurosecent dye structurally identical to Alexa Fluor™ 647 (ThermoFisher). It is efficiently excited by the 594 nm or 633 nm laser lines and is compatible with RFP filters like Cy5, making it well-suited for applications such as fluorescence microscopy and flow cytometry. XFD647 exhibits excellent aqueous solubility and pH stability across a wide range (pH 4–10), ensuring robust signal reproducibility under diverse experimental conditions. The dye enables high-degree conjugation to biomolecules with minimal self-quenching, resulting in enhanced fluorescence intensity and signal stability. Additionally, its high fluorescence quantum yield and superior photostability facilitate the sensitive detection of low-abundance targets, enhancing precision and sensitivity in quantitative fluorescence-based assays.

The alkyne derivative of XFD647 is widely used for labeling azides on peptides, antibodies, and other biomolecules via click chemistry. It participates in copper-catalyzed azide-alkyne cycloaddition (CuAAC) with azide-containing molecules.

Spectrum

Product family

NameExcitation (nm)Emission (nm)Extinction coefficient (cm -1 M -1)Correction Factor (260 nm)Correction Factor (280 nm)
XFD488 alkyne *Same Structure to Alexa Fluor™ 488 alkyne*499520710000.300.11
XFD555 alkyne5535681500000.080.08
XFD635 alkyne633647140,000--
XFD647 TCO6506712390000.000.03
XFD647 Tetrazine6506712390000.000.03
XFD680 alkyne6817041840000.000.05
XFD700 alkyne6967191920000.000.07
XFD750 alkyne7527762400000.000.04
XFD790 alkyne782805260,0000.090.08
AMCA Alkyne34643419000-0.153
Cy3B alkyne56057112000010.0480.069
ICG alkyne789813230000-0.076
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References

View all 42 references: Citation Explorer
Protocol for visualizing newly synthesized proteins in primary mouse hepatocytes.
Authors: Shen, Yuqian and Liu, Wenhua and Zuo, Jian and Han, Junhai and Zhang, Zi Chao
Journal: STAR protocols (2021): 100616
EdU Incorporation To Assess Cell Proliferation and Drug Susceptibility in Naegleria fowleri.
Authors: Troth, Emma V and Kyle, Dennis E
Journal: Antimicrobial agents and chemotherapy (2021): e0001721
Azide-Functionalized Naphthoxyloside as a Tool for Glycosaminoglycan Investigations.
Authors: Willén, Daniel and Mastio, Roberto and Söderlund, Zackarias and Manner, Sophie and Westergren-Thorsson, Gunilla and Tykesson, Emil and Ellervik, Ulf
Journal: Bioconjugate chemistry (2021): 2507-2515
SMALL MOLECULE IMAGING AGENT FOR MUTANT KRAS G12C.
Authors: Koch, Peter D and Quintana, Jeremy and Ahmed, Maaz and Kohler, Rainer H and Weissleder, Ralph
Journal: Advanced therapeutics (2021)
Clickable Galactose Analogues for Imaging Glycans in Developing Zebrafish.
Authors: Daughtry, Jessica L and Cao, Wendy and Ye, Johnny and Baskin, Jeremy M
Journal: ACS chemical biology (2020): 318-324
Page updated on April 15, 2025

Ordering information

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Catalog Number1897
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Additional ordering information

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Physical properties

Molecular weight

1010.09

Solvent

DMSO

Spectral properties

Correction Factor (280 nm)

0.03

Correction Factor (565 nm)

0.1109

Extinction coefficient (cm -1 M -1)

270000

Excitation (nm)

650

Emission (nm)

671

Quantum yield

0.331

Storage, safety and handling

H-phraseH303, H313, H333
Hazard symbolXN
Intended useResearch Use Only (RUO)
R-phraseR20, R21, R22

Storage

Freeze (< -15 °C); Minimize light exposure
UNSPSC12171501
Schematic illustrating the azide–alkyne cycloaddition (“click chemistry”) between an alkyne‐functionalized dye and an azide‐presenting biomolecule. In the presence of a copper catalyst (CuAAC) or under strain‐promoted conditions (SPAAC), the azide and alkyne react to form a stable 1,2,3‐triazole linkage. This highly selective and robust reaction proceeds under mild conditions, tolerates a wide range of functional groups, and is frequently used to label proteins, nucleic acids, and other biomolecules for imaging, proteomics, and high‐throughput assays.
Schematic illustrating the azide–alkyne cycloaddition (“click chemistry”) between an alkyne‐functionalized dye and an azide‐presenting biomolecule. In the presence of a copper catalyst (CuAAC) or under strain‐promoted conditions (SPAAC), the azide and alkyne react to form a stable 1,2,3‐triazole linkage. This highly selective and robust reaction proceeds under mild conditions, tolerates a wide range of functional groups, and is frequently used to label proteins, nucleic acids, and other biomolecules for imaging, proteomics, and high‐throughput assays.
Schematic illustrating the azide–alkyne cycloaddition (“click chemistry”) between an alkyne‐functionalized dye and an azide‐presenting biomolecule. In the presence of a copper catalyst (CuAAC) or under strain‐promoted conditions (SPAAC), the azide and alkyne react to form a stable 1,2,3‐triazole linkage. This highly selective and robust reaction proceeds under mild conditions, tolerates a wide range of functional groups, and is frequently used to label proteins, nucleic acids, and other biomolecules for imaging, proteomics, and high‐throughput assays.
Gallery Image 2

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