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AAT Bioquest

XFD555 alkyne

Product key features

  • Ex/Em: 553/568 nm
  • Extinction coefficient: 155,000 cm-1M-1
  • Reactive Group: Alkyne
  • Efficient Conjugation: Click chemistry labeling of azides on peptides, antibodies, and other biomolecules
  • Bright & Stable: Exhibits intense fluorescence with resilience to photobleaching and pH variations from 4 to 10
  • Hydrophilic: Minimizes aggregation, enhancing signal clarity for advanced imaging and live-cell studies

Product description

XFD555, manufactured by AAT Bioquest, is structurally identical to Alexa Fluor™ 555 (ThermoFisher). It is a bright orange-fluorescent dye with an excitation optimized for use with either the 488 nm line of the argon-ion laser or the 532 nm line of the frequency-doubled Nd:YAG laser. The high fluorescence quantum yield and high photostability of XFD555 allow for the detection of low-abundance biological structures with great sensitivity. XFD555 demonstrates good aqueous solubility and pH-insensitivity over a broad pH range (pH 4–10), ensuring stable fluorescence generation under varying experimental conditions. XFD555 dye molecules can be attached to proteins at high molar ratios without significant self-quenching, enabling brighter conjugates and more sensitive detection in imaging and flow cytometry.

The alkyne derivative of XFD555 is widely used for labeling azides on peptides, antibodies, and other biomolecules via click chemistry. It participates in copper-catalyzed azide-alkyne cycloaddition (CuAAC) with azide-containing molecules.

Spectrum

Product family

NameExcitation (nm)Emission (nm)Extinction coefficient (cm -1 M -1)Quantum yieldCorrection Factor (260 nm)Correction Factor (280 nm)
XFD488 alkyne *Same Structure to Alexa Fluor™ 488 alkyne*499520710000.9210.300.11
XFD555 TCO5535681500000.110.080.08
XFD555 Tetrazine5535681500000.110.080.08
XFD635 alkyne633647140,000---
XFD647 Alkyne6506712700000.331-0.03
XFD680 alkyne6817041840000.3610.000.05
XFD700 alkyne6967191920000.2510.000.07
XFD750 alkyne7527762400000.1210.000.04
XFD790 alkyne782805260,000-0.090.08

References

View all 50 references: Citation Explorer
Cathepsin B dependent activatable trigger fluorophore (CAT-Fluor) for in situ functional imaging of antibody-drug conjugates.
Authors: Ning, Jiangtao and Shen, Yikai and Gao, Hongfan and Sun, Li and Bai, Xuefei and Jin, Shijie and Wu, Yue and Sun, Yanping and Xu, Yingchun and Li, Xin and Pan, Liqiang
Journal: Biosensors & bioelectronics (2025): 117184
Fluor NMR study of amino acid derived ligand to study TSPO.
Authors: Duma, Luminita and Schneider, Severine and Martinez, Agathe and Hachet, Cathy and Bihel, Frederic and Lacapere, Jean-Jacques
Journal: Biochimie (2025)
Optoelectronic Response to the Fluor Ion Bond on 4-(4,4,5,5-Tetramethyl-1,3,2-dioxoborolan-2-yl)benzaldehyde.
Authors: Guevara, Ulises J and Núñez, Jesús and Pérez, Laura M and Tiutiunnyk, Anton and Urdaneta, Neudo and Cisternas, Eduardo and Laroze, David
Journal: International journal of molecular sciences (2024)
Unveiling the Structure-Fluorogenic Property Relationship of Seoul-Fluor-Derived Bioorthogonal Tetrazine Probes.
Authors: Son, Hayoung and Kim, Dahham and Kim, Sohee and Gi Byun, Wan and Bum Park, Seung
Journal: Angewandte Chemie (International ed. in English) (2024): e202421982
Characterization and in vitro bioactivity evaluation of polyvinyl alcohol incorporated electro spun chitosan/ fluor apatite nanofibrous scaffold for bone tissue engineering.
Authors: Mirjalili, Fatemeh and Mahmoodi, Mahboobeh and Khazali, Shiva
Journal: Journal of the mechanical behavior of biomedical materials (2024): 106322
Page updated on April 15, 2025

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Catalog Number1724
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Physical properties

Solvent

DMSO

Spectral properties

Correction Factor (260 nm)

0.08

Correction Factor (280 nm)

0.08

Extinction coefficient (cm -1 M -1)

150000

Excitation (nm)

553

Emission (nm)

568

Quantum yield

0.11

Storage, safety and handling

H-phraseH303, H313, H333
Hazard symbolXN
Intended useResearch Use Only (RUO)
R-phraseR20, R21, R22

Storage

Freeze (< -15 °C); Minimize light exposure
UNSPSC12171501
Schematic illustrating the azide–alkyne cycloaddition (“click chemistry”) between an alkyne‐functionalized dye and an azide‐presenting biomolecule. In the presence of a copper catalyst (CuAAC) or under strain‐promoted conditions (SPAAC), the azide and alkyne react to form a stable 1,2,3‐triazole linkage. This highly selective and robust reaction proceeds under mild conditions, tolerates a wide range of functional groups, and is frequently used to label proteins, nucleic acids, and other biomolecules for imaging, proteomics, and high‐throughput assays.
Schematic illustrating the azide–alkyne cycloaddition (“click chemistry”) between an alkyne‐functionalized dye and an azide‐presenting biomolecule. In the presence of a copper catalyst (CuAAC) or under strain‐promoted conditions (SPAAC), the azide and alkyne react to form a stable 1,2,3‐triazole linkage. This highly selective and robust reaction proceeds under mild conditions, tolerates a wide range of functional groups, and is frequently used to label proteins, nucleic acids, and other biomolecules for imaging, proteomics, and high‐throughput assays.
Schematic illustrating the azide–alkyne cycloaddition (“click chemistry”) between an alkyne‐functionalized dye and an azide‐presenting biomolecule. In the presence of a copper catalyst (CuAAC) or under strain‐promoted conditions (SPAAC), the azide and alkyne react to form a stable 1,2,3‐triazole linkage. This highly selective and robust reaction proceeds under mild conditions, tolerates a wide range of functional groups, and is frequently used to label proteins, nucleic acids, and other biomolecules for imaging, proteomics, and high‐throughput assays.