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AAT Bioquest

XFD555 azide

Product key features

  • Ex/Em: 553/568 nm
  • Extinction coefficient: 155,000 cm-1M-1
  • Reactive Group: Azide
  • Click Chemistry Conjugation: Efficiently and rapidly labels terminal alkynes via CuAAC and copper-free SPAAC
  • Bright & Stable: Exhibits intense fluorescence with resilience to photobleaching and pH variations from 4 to 10
  • Hydrophilic: Minimizes aggregation, enhancing signal clarity for advanced imaging and live-cell studies

Product description

XFD555, manufactured by AAT Bioquest, is structurally identical to Alexa Fluor™ 555 (ThermoFisher). It is a bright orange-fluorescent dye with an excitation optimized for use with either the 488 nm line of the argon-ion laser or the 532 nm line of the frequency-doubled Nd:YAG laser. The high fluorescence quantum yield and high photostability of XFD555 allow for the detection of low-abundance biological structures with great sensitivity. XFD555 demonstrates good aqueous solubility and pH-insensitivity over a broad pH range (pH 4–10), ensuring stable fluorescence generation under varying experimental conditions. XFD555 dye molecules can be attached to proteins at high molar ratios without significant self-quenching, enabling brighter conjugates and more sensitive detection in imaging and flow cytometry.

The azide derivative of XFD555 is widely used for labeling terminal alkynes on peptides, antibodies, and other biomolecules via click chemistry. It participates in copper-catalyzed azide-alkyne cycloaddition (CuAAC) with alkyne-containing molecules and strain-promoted alkyne-azide cycloaddition (SPAAC) with DBCO- or BCN-containing molecules.

Spectrum

Product family

NameExcitation (nm)Emission (nm)Extinction coefficient (cm -1 M -1)Correction Factor (260 nm)Correction Factor (280 nm)
XFD488 azide *Same Structure to Alexa Fluor™ 488 azide*499520710000.300.11
XFD647 Azide650671270000-0.03
XFD350 azide343441190000.250.19
XFD405 azide40142135,0000.230.70
XFD430 azide43254015,000-0.28
XFD514 azide518543800000.310.18
XFD546 azide5615721120000.210.12
XFD532 azide534553810000.240.09
XFD568 azide579603913000.450.46
XFD594 azide590618900000.430.56
XFD610 azide611629144,0000.430.44
XFD633 azide632650159,000-0.55
XFD660 azide6636911320000.000.10
XFD680 azide6817041840000.000.05
XFD555 Phalloidin *equivalent to Alexa Fluor® 555 phalloidin*5535681500000.080.08
XFD555 TCO5535681500000.080.08
XFD555 Tetrazine5535681500000.080.08
XFD750 azide7527762400000.000.04
XFD700 azide6967191920000.000.07
XFD790 azide782805260,0000.090.08
XFD635 azide633647140,000--
AMCA Azide34643419000-0.153
ICG azide789813230000-0.076
Cy3B azide56057112000010.0480.069
Show More (15)

References

View all 50 references: Citation Explorer
Super-Resolved Fluorescence Lifetime Imaging of Single Cy3 Molecules and Quantum Dots Using Time-Correlated Single Photon Counting with a Four-Pixel Fiber Optic Array Camera.
Authors: Koch, Liam A and Dunlap, Megan K and Ryan, Duncan P and Werner, James H and Goodwin, Peter M and Green, Christopher M and Díaz, Sebastián A and Medintz, Igor L and Susumu, Kimihiro and Stewart, Michael H and Gelfand, Martin P and Van Orden, Alan
Journal: The journal of physical chemistry. A (2025): 3-13
The FRET-Based APTA Sensor/Cy3 Complex for Glucose Determination.
Authors: Bardajee, Ghasem Rezanejade and Chahrogh, Afsaneh Rahimi and Atashkadi, Mojdeh
Journal: Luminescence : the journal of biological and chemical luminescence (2025): e70097
Cy3-Based Nanoviscosity Determination of Mucus: Effect of Mucus Collection Methods and Antibiotics Treatment.
Authors: Gottwald, Jacqueline and Balke, Jens and Stellmacher, Johannes and van Vorst, Kira and Ghazisaeedi, Fereshteh and Fulde, Marcus and Alexiev, Ulrike
Journal: Macromolecular bioscience (2024): e2300437
4-Hydroxy-2-pyridone derivatives with antitumor activity produced by mangrove endophytic fungus Talaromyces sp. CY-3.
Authors: Yang, Wencong and Zhang, Bingzhi and Tan, Qi and Chen, Yan and Chen, Tao and Zou, Ge and Sun, Bing and Wang, Bo and Yuan, Jie and She, Zhigang
Journal: European journal of medicinal chemistry (2024): 116314
Molecular Dynamical and Quantum Mechanical Exploration of the Site-Specific Dynamics of Cy3 Dimers Internally Linked to dsDNA.
Authors: Sorour, Mohammed I and Kistler, Kurt A and Marcus, Andrew H and Matsika, Spiridoula
Journal: The journal of physical chemistry. B (2024): 7750-7760
Page updated on February 12, 2025

Ordering information

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Catalog Number1723
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Physical properties

Solvent

DMSO

Spectral properties

Correction Factor (260 nm)

0.08

Correction Factor (280 nm)

0.08

Extinction coefficient (cm -1 M -1)

150000

Excitation (nm)

553

Emission (nm)

568

Quantum yield

0.11

Storage, safety and handling

H-phraseH303, H313, H333
Hazard symbolXN
Intended useResearch Use Only (RUO)
R-phraseR20, R21, R22

Storage

Freeze (< -15 °C); Minimize light exposure
UNSPSC12171501