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AAT Bioquest

Phalloidin Conjugates

equivalent to Alexa Fluor® 647 phalloidin

Product key features

  • Specific F-Actin Binding: Retains high affinity and specificity for filamentous actin in diverse biological systems.
  • Bright and Stable Fluorescence: XFD647 offers exceptional signal intensity and photostability for extended imaging.
  • Low Background Signal: Minimal nonspecific binding ensures high-contrast actin visualization.
  • Versatile Applications: Reliable in fixed tissues, cultured cells, and actin polymerization assays.
  • Multiplex Imaging Ready: Compatible with various fluorescent tags and detection systems for co-labeling experiments.

Product description

XFD647 phalloidin is a high-affinity probe for filamentous actin (F-actin), conjugated to XFD647, a bright, photostable, far-red fluorescent dye. XFD647, manufactured by AAT Bioquest, is structurally equivalent to Alexa Fluor™ 647 (ThermoFisher), ensuring comparable performance in fluorescence applications.

Phalloidin, a bicyclic peptide toxin derived from Amanita phalloides (commonly known as the death cap mushroom), is well known for its high specificity and strong binding affinity to F-actin. When conjugated to XFD647, phalloidin enables precise, high-contrast visualization of F-actin structures with minimal background interference. This fluorescent conjugate is highly effective for imaging F-actin in a wide range of biological specimens, including plant and animal tissues, fixed and permeabilized cells, and cell-free systems.

XFD647 phalloidin binds to F-actin with nanomolar affinity, making it an excellent tool for labeling, identifying, and quantifying actin filaments. Its superior photostability and blinking properties make it particularly well suited for super-resolution microscopy techniques such as SIM and STORM. Additionally, XFD647 phalloidin staining is fully compatible with other fluorescent labels, including fluorescent proteins, Qdot nanocrystals, and iFluor®-conjugated secondary antibodies, allowing seamless integration into multiplex fluorescence imaging workflows.

Example protocol

AT A GLANCE

Protocol Summary
  1. Prepare samples in microplate wells

  2. Remove liquid from samples in the plate

  3. Add XFD647 Phalloidin Conjugate solution (100 μL/well)

  4. Stain the cells at room temperature for 20 to 90 minutes

  5. Wash the cells

  6. Examine the specimen under microscope with Cy3 filter

Important Note

Warm the vial to room temperature and centrifuge briefly before opening.

Storage and Handling Conditions

The solution should be stable for at least 6 months if store at -20 °C. Protect the fluorescent conjugates from light, and avoid freeze/thaw cycles.

Note: Phalloidin is toxic, although the amount of toxin present in a vial could be lethal only to a mosquito (LD50 of phalloidin = 2 mg/kg), it should be handled with care.

PREPARATION OF WORKING SOLUTION

XFD647 Phalloidin Conjugate working solution
  1. Add 1 µL of XFD647 Phalloidin Conjugate solution to 1 mL of PBS with 1% BSA.

    Note: The stock solution of phalloidin conjugate should be aliquoted and stored at -20 °C. protected from light.

    Note: Different cell types might be stained differently. The concentration of phalloidin conjugate working solution should be prepared accordingly.

SAMPLE EXPERIMENTAL PROTOCOL

Stain the cells
  1. Perform formaldehyde fixation. Incubate cells with 3.0–4.0 % formaldehyde in PBS at room temperature for 10–30 minutes.

    Note: Avoid any methanol containing fixatives since methanol can disrupt actin during the fixation process. The preferred fixative is methanol-free formaldehyde.

  2. Rinse the fixed cells 2–3 times in PBS.

  3. Optional: Add 0.1% Triton X-100 in PBS into fixed cells for 3 to 5 minutes to increase permeability. Rinse the cells 2–3 times in PBS.

  4. Add 100 μL/well (96-well plate) of XFD647 Phalloidin Conjugate working solution into the fixed cells, and stain the cells at room temperature for 20 to 90 minutes.

  5. Rinse cells gently with PBS 2 to 3 times to remove excess phalloidin conjugate before plating, sealing and imaging under microscope with Cy5 filter set.

Spectrum

Product family

NameExcitation (nm)Emission (nm)Extinction coefficient (cm -1 M -1)Quantum yieldCorrection Factor (260 nm)Correction Factor (280 nm)
XFD350 Phalloidin *XFD350 Same Structure to Alexa Fluor™ 350*34344119000-0.250.19
XFD488 Phalloidin *XFD488 Same Structure to Alexa Fluor™ 488*499520730000.9210.30.11
XFD594 Phalloidin *XFD594 Same Structure to Alexa Fluor™ 594*590618920000.6610.430.56
XFD647 Azide6506712700000.331-0.03
XFD647 Alkyne6506712700000.331-0.03
XFD647 amine6506712700000.331-0.03
XFD647 acid6506712700000.331-0.03
XFD555 Phalloidin *equivalent to Alexa Fluor® 555 phalloidin*5535681500000.110.080.08
XFD750 Phalloidin *equivalent to Alexa Fluor® 750 phalloidin*7527762400000.1210.000.04
XFD647 TCO6506712390000.3310.000.03
XFD647 Tetrazine6506712390000.3310.000.03
XFD647-UTP6506712390000.3310.000.03
Show More (3)

References

View all 10 references: Citation Explorer
TGFβ2 Induces the Formation of Cross-Linked Actin Networks (CLANs) in Human Trabecular Meshwork Cells Through the Smad and Non-Smad Dependent Pathways.
Authors: Montecchi-Palmer, Michela and Bermudez, Jaclyn Y and Webber, Hannah C and Patel, Gaurang C and Clark, Abbot F and Mao, Weiming
Journal: Investigative ophthalmology & visual science (2017): 1288-1295
Neuroprotective effects of hypothermia on synaptic actin cytoskeletal changes induced by perinatal asphyxia.
Authors: Muñiz, Javier and Romero, Juan and Holubiec, Mariana and Barreto, George and González, Janneth and Saint-Martin, Madeleine and Blanco, Eduardo and Carlos Cavicchia, Juan and Castilla, Rocío and Capani, Francisco
Journal: Brain research (2014): 81-90
Glycation of extracellular matrix proteins impairs migration of immune cells.
Authors: Haucke, Elisa and Navarrete-Santos, Alexander and Simm, Andreas and Silber, Rolf-Edgar and Hofmann, Britt
Journal: Wound repair and regeneration : official publication of the Wound Healing Society [and] the European Tissue Repair Society (2014): 239-45
Effects of perinatal asphyxia on rat striatal cytoskeleton.
Authors: Saraceno, G E and Ayala, M V and Badorrey, M S and Holubiec, M and Romero, J I and Galeano, P and Barreto, G and Giraldez-Alvárez, L D and Kölliker-Fres, R and Coirini, H and Capani, F
Journal: Synapse (New York, N.Y.) (2012): 9-19
Cross-linked actin networks (CLANs) are present in lamina cribrosa cells.
Authors: Job, Raly and Raja, Vignesh and Grierson, Ian and Currie, Laura and O'Reilly, Steven and Pollock, Natalie and Knight, Emma and Clark, Abbot F
Journal: The British journal of ophthalmology (2010): 1388-92
Page updated on October 9, 2024

Ordering information

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Additional ordering information

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Physical properties

Molecular weight

1932.46

Solvent

DMSO

Spectral properties

Correction Factor (260 nm)

0.00

Correction Factor (280 nm)

0.03

Extinction coefficient (cm -1 M -1)

239000

Excitation (nm)

650

Emission (nm)

671

Quantum yield

0.331

Storage, safety and handling

H-phraseH301, H311, H331
Hazard symbolT
Intended useResearch Use Only (RUO)
R-phraseR23, R24, R25

Storage

Freeze (< -15 °C); Minimize light exposure
UNSPSC12352200

Platform

Fluorescence microscope

ExcitationCy5 filter
EmissionCy5 filter
Recommended plateBlack wall, clear bottom