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AAT Bioquest

XFD647 PEG4 DBCO

Product key features

  • Ex/Em: 650/671 nm
  • Extinction coefficient: 270,000 cm-1M-1
  • Reactive Group: DBCO
  • Copper-Free Bioorthogonal Labeling: Enables rapid and efficient azide conjugation via copper-free SPAAC
  • Bright & Stable: Delivers intense fluorescence with resilience to photobleaching and pH variations from 4 to 10
  • Hydrophilic: Minimizes aggregation, enhancing signal clarity for advanced imaging and live-cell studies

Product description

XFD647, manufactured by AAT Bioquest, is a bright far-red flurosecent dye structurally identical to Alexa Fluor™ 647 (ThermoFisher). It is efficiently excited by the 594 nm or 633 nm laser lines and is compatible with RFP filters like Cy5, making it well-suited for applications such as fluorescence microscopy and flow cytometry. XFD647 exhibits excellent aqueous solubility and pH stability across a wide range (pH 4–10), ensuring robust signal reproducibility under diverse experimental conditions. The dye enables high-degree conjugation to biomolecules with minimal self-quenching, resulting in enhanced fluorescence intensity and signal stability. Additionally, its high fluorescence quantum yield and superior photostability facilitate the sensitive detection of low-abundance targets, enhancing precision and sensitivity in quantitative fluorescence-based assays.

The DBCO derivative of XFD647 is a highly reactive cycloalkyne optimized for copper-free click chemistry (SPAAC, strain-promoted azide-alkyne cycloaddition). This derivative exhibits a significantly higher reaction rate with azides compared to other cyclooctynes and copper-catalyzed click reactions (CuAAC). Uniquely, DBCO does not react with tetrazines, allowing for its use in bioorthogonal reactions alongside trans-cyclooctenes and tetrazines. For applications where the presence of copper is problematic, XFD647 DBCO serves as an effective alternative to copper-dependent fluorescent alkynes.

Spectrum

Product family

NameExcitation (nm)Emission (nm)Extinction coefficient (cm -1 M -1)Correction Factor (260 nm)Correction Factor (280 nm)
XFD488 PEG4 DBCO499520710000.300.11
XFD350 PEG4 DBCO343441190000.250.19
XFD405 PEG4 DBCO40142135,0000.230.70
XFD430 PEG4 DBCO43254015,000-0.28
XFD514 PEG4 DBCO518543800000.310.18
XFD546 PEG4 DBCO5615721120000.210.12
XFD532 PEG4 DBCO534553810000.240.09
XFD568 PEG4 DBCO579603913000.450.46
XFD594 PEG4 DBCO590618900000.430.56
XFD610 PEG4 DBCO611629144,0000.430.44
XFD633 PEG4 DBCO632650159,000-0.55
XFD660 PEG4 DBCO6636911320000.000.10
XFD680 PEG4 DBCO6817041840000.000.05
XFD555 PEG4 DBCO5535681500000.080.08
XFD750 PEG4 DBCO7527762400000.000.04
XFD700 PEG4 DBCO6967191920000.000.07
XFD790 PEG4 DBCO782805260,0000.090.08
XFD635 PEG4 DBCO633647140,000--
Show More (9)

References

View all 23 references: Citation Explorer
Key role of cycloalkyne nature in alkyne-dye reagents for enhanced specificity of intracellular imaging by bioorthogonal bioconjugation.
Authors: Vidyakina, Alexandra A and Silonov, Sergey A and Govdi, Anastasia I and Ivanov, Alexander Yu and Podolskaya, Ekaterina P and Balova, Irina A and Bräse, Stefan and Danilkina, Natalia A
Journal: Organic & biomolecular chemistry (2024): 7637-7642
Bridging the Translation of ICG-1-Maltotriose: A Multimodal Sensor for Monitoring and Detecting Bacterial Infections.
Authors: Zlitni, Aimen and Yang, Stella and Achterberg, Friso B and Gowrishankar, Gayatri and Steinberg, Idan and Azevedo, Carmen and Gambhir, Sanjiv S and Valdez, Tulio A
Journal: ACS sensors (2024): 2806-2814
Clickable Albumin Nanoparticles for Pretargeted Drug Delivery toward PD-L1 Overexpressing Tumors in Combination Immunotherapy.
Authors: Gerke, Christoph and Zabala Gutierrez, Irene and Méndez-González, Diego and Cruz, M Carmen Iglesias-de la and Mulero, Francisca and Jaque, Daniel and Rubio-Retama, Jorge
Journal: Bioconjugate chemistry (2022): 821-828
Click-Ready Perfluorocarbon Nanoemulsion for 19F MRI and Multimodal Cellular Detection.
Authors: Perez, Adam S and Zhou, Junhan and Leach, Benjamin and Xu, Hongyan and Lister, Deanne and Adams, Stephen R and Ahrens, Eric T and Louie, Angelique Y
Journal: ACS nanoscience Au (2022): 102-110
Orthogonal Covalent Entrapment of Cargo into Biodegradable Polymeric Micelles via Native Chemical Ligation.
Authors: Hebels, Erik R and Bindt, Felix and Walther, Johanna and van Geijn, Michiel and Weterings, Jimmy and Hu, Qizhi and Colombo, Claudio and Liskamp, Rob and Rijcken, Cristianne and Hennink, Wim E and Vermonden, Tina
Journal: Biomacromolecules (2022)
Page updated on March 11, 2025

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Catalog Number1734
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Physical properties

Solvent

DMSO

Spectral properties

Correction Factor (260 nm)

0.00

Correction Factor (280 nm)

0.03

Extinction coefficient (cm -1 M -1)

239000

Excitation (nm)

650

Emission (nm)

671

Quantum yield

0.331

Storage, safety and handling

H-phraseH303, H313, H333
Hazard symbolXN
Intended useResearch Use Only (RUO)
R-phraseR20, R21, R22

Storage

Freeze (< -15 °C); Minimize light exposure
UNSPSC12171501