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Oligo(dT) Magnetic Beads

Optimized for mRNA Extraction, 1.0%
Oligo(dT)30 magnetic beads extract and isolate mRNA from crude samples, cell lysates or tissues, by hybridizing with the poly(A) tail. Captured mRNA is available for downstream applications such as cDNA synthesis and RT-PCR.

Given the growing interest in transcriptome studies, it has become essential to be able to isolate mRNA against related species, such as transfer RNA (tRNA) and ribosomal RNA (rRNA). Many RNA purification techniques, however, are non-specific to mRNA. Additionally, mRNA only constitutes a small portion of total cellular RNA, further making purification difficult. Fortunately, by targeting the polyadenylated RNA tail on the 3’ end of mRNA, oligo(dT)-coated magnetic beads can easily extract mRNA under standard hybridization conditions. Once extracted, bound mRNA can conveniently be eluted or serve directly as the primer for cDNA synthesis with reverse transcriptase.

Density1.4 g/cm3
Diameter0.7 µm
Bead concentration1% (10 mg / mL)
Storage bufferPBS pH 7.4, 0.1% Proclin 300
Binding capacity10 µg mRNA per 100 µL (1 mg) of magnetic beads solution

Example protocol

AT A GLANCE

  1. Prepare the cells or tissue lysate.
  2. Prepare the Oligo(dT)30 Magnetic Beads.
  3. Add the lysate to the prepared beads, incubate and wash the beads.
  4. Elute the bound mRNA and proceed for further analysis.

CELL PREPARATION

Note: Please note that the protocol described is a general guideline and should be optimized based on individual experimental needs.

Cultured Cells or Cell Suspension
  1. Pellet the cells (1-10×106), by centrifugation (e.g., 300-400 × g for 10 minutes at 4°C).
  2. Resuspend the cells in phosphate buffer salt (PBS) and centrifuge again. The pellet is used immediately after centrifugation.
  3. Add the appropriate volume (1mL) of lysis/binding buffer to either a frozen cell pellet or to a fresh cell pellet.
Solid Plant or Animal Tissue
  1. Divide the tissue equally during freezing to avoid mRNA degradation.

    Note: Use appropriate amount (plant tissue ~100mg, animal tissue ~50mg), because the use of too much tissue will reduce mRNA yield and purity.

  2. Grind the frozen tissue rapidly in liquid nitrogen.
  3. Transfer the frozen powder to an appropriate volume (1mL) of lysis/binding buffer and homogenize until it is completely dissolved. Rapid dissolution in binding buffer is essential to prevent mRNA degradation.

PREPARATION OF WORKING SOLUTION

Oligo (dT)30 Magnetic Beads Preparation
  1. Resuspend the oligo (dT)30 beads completely before use.
  2. Transfer the desired volume (50μL-1mL) of beads from the stock tube to an RNase-free 1.5-mL microcentrifuge tube and place the tube on a magnet block.
  3. When the suspension is clear, remove the supernatant.
  4. Remove the tube from the magnet and add the same amount of fresh lysis buffer to clean the magnetic beads. 
    Note: For very small bead volumes (50–100 μL) use 100 μL wash volume to ease handling.
Recommended buffers (Not provided):

1. Lysis/Binding Buffer

ComponentFinal concentration
Tris-HCl, pH 7.5150 mM
LiCl400 mM
EDTA.2Na10 mM
LiDS1%
Dithiothreitol (DTT)10 mM

2. Washing Buffer A

ComponentFinal concentration
Tris-HCl, pH 7.515 mM
LiCl200 mM
EDTA.2Na
1 mM
LiDS
0.1%

3. Washing Buffer B

ComponentFinal concentration
Tris-HCl, pH 7.515 mM
LiCl200 mM
EDTA.2Na1 mM

4. Elution Buffer

ComponentFinal concentration
Tris-HCl, pH 8.010 mM
EDTA.2Na1 mM

SAMPLE EXPERIMENTAL PROTOCOL

mRNA Isolation Protocol
  1. Remove the lysis buffer from the pre-washed Oligo(dT)30 beads by placing on the magnet until the suspension is clear and discard the supernatant.
  2. Remove the microcentrifuge tube from the magnet and add the appropriate volume of sample lysate (500μL-1mL).
  3. Resuspend the beads completely in the sample lysate.
  4. Incubate with continuous mixing (rotating or roller mixer) for 3mins at room temperature to allow the polyA tail of the mRNA to hybridize to the oligo (dT)30 on the beads.

    Note: If the solution is viscous, increase the incubation time or adjust the volume appropriately.

  5. Place the vial on the magnet for 2 minutes and remove the supernatant. If the solution is noticeably viscous, increase this time to ~10 minutes.
  6. Wash the beads/mRNA complex two times with the appropriate volume (1mL) of washing buffer A at room temperature.
  7. Use the magnet to separate the beads from the solution between each washing step.
  8. Wash the beads/mRNA complex once with the appropriate volume(1mL) of washing buffer B at room temperature. Use the magnet to separate the beads from the solution.
  9. Add an appropriate volume (20-100μL) of elution buffer and incubate at 65°C to 80°C for 2 minutes.
  10. Immediately place the tube on the magnet, transfer the supernatant containing the mRNA to a new RNase-free tube and place this tube on ice. Proceed further with downstream analysis.

References

View all 13 references: Citation Explorer
Development of a 3D-printed single-use separation chamber for use in mRNA-based vaccine production with magnetic microparticles.
Authors: Wommer, Lars and Meiers, Patrick and Kockler, Isabelle and Ulber, Roland and Kampeis, Percy
Journal: Engineering in life sciences (2021): 573-588
Development of a magnetic electrochemical bar code array for point mutation detection in the H5N1 neuraminidase gene.
Authors: Krejcova, Ludmila and Hynek, David and Kopel, Pavel and Rodrigo, Miguel Angel Merlos and Adam, Vojtech and Hubalek, Jaromir and Babula, Petr and Trnkova, Libuse and Kizek, Rene
Journal: Viruses (2013): 1719-39
Prognostic significance of survivin-expressing circulating tumour cells in T1G3 bladder cancer.
Authors: Gradilone, Angela and Petracca, Arianna and Nicolazzo, Chiara and Gianni, Walter and Cortesi, Enrico and Naso, Giuseppe and Vincenzi, Bruno and Cristini, Cristiano and De Berardinis, Ettore and Di Silverio, Franco and Aglianò, Anna Maria and Gazzaniga, Paola
Journal: BJU international (2010): 710-5
DNA hybridization at microbeads with cathodic stripping voltammetric detection.
Authors: Palecek, E and Billová, S and Havran, L and Kizek, R and Miculková, A and Jelen, F
Journal: Talanta (2002): 919-30
[Subtractive gene cloning using dynabeads oligo(dT)25 for elucidation of pseudohyphal formation in Candida tropicalis].
Authors: Imanishi, Y and Kawai, T and Iwaguchi, S and Suzuki, T and Kamihara, T and Yokoyama, K and Nishimura, K
Journal: Nihon Ishinkin Gakkai zasshi = Japanese journal of medical mycology (2001): 243-51
Page updated on August 9, 2024

Ordering information

Price
Unit size
1 mL
2 mL
5 mL
Catalog Number
V105120V105121V105122
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Physical properties

Solvent

N/A

Storage, safety and handling

H-phraseH303, H313, H333
Hazard symbolXN
Intended useResearch Use Only (RUO)
R-phraseR20, R21, R22

Storage

Refrigerated (2-8 °C)
UNSPSC12352200
Magnetic beads coated with oligo(dt) allows for the capture of mRNA with polyadenylated tails.
Magnetic beads coated with oligo(dt) allows for the capture of mRNA with polyadenylated tails.
Magnetic beads coated with oligo(dt) allows for the capture of mRNA with polyadenylated tails.