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MitoDNA™ Red 680

The fluorescence response of MitoDNA™ Red 680 (5 µM) in HeLa cells was assessed before and after DNase treatment. Fluorescence intensities were monitored using fluorescence microscopy.
The fluorescence response of MitoDNA™ Red 680 (5 µM) in HeLa cells was assessed before and after DNase treatment. Fluorescence intensities were monitored using fluorescence microscopy.
The fluorescence response of MitoDNA™ Red 680 (5 µM) in HeLa cells was assessed before and after DNase treatment. Fluorescence intensities were monitored using fluorescence microscopy.
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Physical properties
Molecular weight486.44
SolventDMSO
Spectral properties
Excitation (nm)597
Emission (nm)681
Storage, safety and handling
H-phraseH303, H313, H333
Hazard symbolXN
Intended useResearch Use Only (RUO)
R-phraseR20, R21, R22
StorageFreeze (< -15 °C); Minimize light exposure
UNSPSC12171501

OverviewpdfSDSpdfProtocol


See also: Mitochondria
Molecular weight
486.44
Excitation (nm)
597
Emission (nm)
681
There are limited probes available that effectively detect mitochondrial deoxyribonucleic acid (mtDNA). Common fluorescent DNA probes, such as DAPI, Hoechst, or SYBR® Green, lack the specificity required for mitochondrial targeting, primarily staining nuclear DNA. MitoDNA™ Red 680 is a cell-permeable dye that specifically stains mtDNA in live cells, offering an efficient method for the dynamic imaging of mtDNA. This dye exhibits a large Stokes shift, providing an excellent signal-to-noise ratio and enabling easy multiplex staining with other fluorescent probes. mtDNA is a small, circular DNA molecule located within mitochondria in the cytoplasm. It is supplementary to nuclear DNA and encodes 37 genes essential for mitochondrial and cellular functions. Mitochondria are responsible for ATP synthesis through oxidative phosphorylation and contain the genetic information for synthesizing key enzymes, transfer RNA (tRNA), and ribosomal RNA (rRNA). Mutations and disorders in mtDNA can lead to a range of health issues, including age-related hearing loss, diabetes, and failures in the brain, heart, and liver. Additionally, mtDNA mutations are associated with an increased risk of various cancers, including lymphomas, leukemias, and tumors in the breast, intestines, liver, and kidneys.

Platform


Fluorescence microscope

Excitation600 nm
Emission680 nm
Recommended plateBlack wall/clear bottom

Example protocol


AT A GLANCE

Important Note

Before using MitoDNA™ Red 680 for the first time, allow it to thaw at room temperature. Then, briefly centrifuge it to collect the dried pellet.

Protocol Summary
  1. Prepare cells in a growth medium.

  2. Stain cells with MitoDNA™ Red 680 working solution.

  3. Incubate samples for 5 to 15 minutes at 37 °C.

  4. Monitor fluorescence intensity at Ex/Em = 600/680 nm.

PREPARATION OF STOCK SOLUTIONS

Unless otherwise noted, all unused stock solutions should be divided into single-use aliquots and stored at -20 °C after preparation. Avoid repeated freeze-thaw cycles

MitoDNA™ Red 680 Stock Solution
  1. Prepare a 5 to 10 mM MitoDNA™ Red 680 stock solution in DMSO. For example, add 205 μL of DMSO to the MitoDNA™ Red 680 vial to create a 10 mM stock solution.

    Note: Prepare a single aliquot of the unused MitoDNA™ Red 680 stock solution and store it at ≤ -20 º C, protected from light. Avoid repeated freeze-thaw cycles.

PREPARATION OF WORKING SOLUTION

MitoDNA™ Red 680 Working Solution
  1. Prepare a 5 to 10 μM working solution by diluting the MitoDNA™ Red 680 stock solution in Hanks' solution with 20 mM HEPES buffer (HHBS).

    Note: For optimal results, use this solution within a few hours of preparation.

    Note: Cover the working solution with foil or store it in a dark place to protect it from light.

SAMPLE EXPERIMENTAL PROTOCOL

  1. Plate the cells in a 96-well plate with black walls and a clear bottom.

  2. Remove the cell culture medium and add 100 µL of MitoDNA™ Red 680 working solution directly to the cells.

  3. Incubate the cells at 37°C for 5-15 minutes, protected from light.

    Note: The concentration and incubation time of MitoDNA™ Red 680 may vary depending on the cell line. Test different concentrations to determine the optimal dose.

  4. Remove the dye working solution and wash the cells twice with HHBS buffer.

  5. Add HHBS buffer and analyze the cells using a fluorescence microscope with excitation/emission settings of 600/680 nm.

Calculators


Common stock solution preparation

Table 1. Volume of DMSO needed to reconstitute specific mass of MitoDNA™ Red 680 to given concentration. Note that volume is only for preparing stock solution. Refer to sample experimental protocol for appropriate experimental/physiological buffers.

0.1 mg0.5 mg1 mg5 mg10 mg
1 mM205.575 µL1.028 mL2.056 mL10.279 mL20.558 mL
5 mM41.115 µL205.575 µL411.15 µL2.056 mL4.112 mL
10 mM20.558 µL102.788 µL205.575 µL1.028 mL2.056 mL

Molarity calculator

Enter any two values (mass, volume, concentration) to calculate the third.

Mass (Calculate)Molecular weightVolume (Calculate)Concentration (Calculate)Moles
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Spectrum


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spectrum

Spectral properties

Excitation (nm)597
Emission (nm)681

Product Family


NameExcitation (nm)Emission (nm)
MitoDNA™ Red 610508607
MitoDNA™ Red 710511707

Images


References


View all 50 references: Citation Explorer
Molecular and cellular consequences of mitochondrial DNA double-stranded breaks.
Authors: Yu, Chenxiao and Asadian, Samieh and Tigano, Marco
Journal: Human molecular genetics (2024): R12-R18
Coordinating mitochondrial translation with assembly of the OXPHOS complexes.
Authors: Kremer, Laura S and Rehling, Peter
Journal: Human molecular genetics (2024): R47-R52
Complete mitochondrial DNA sequence of Alboglossiphonia lata Oka, 1910 (Rhynchobdellida: Glossiphoniidae) and its phylogenetic analysis.
Authors: Jin, Panpan and Tian, Yu and Zang, Erhuan and Zeng, Lingchao and Zhang, Zhaolei and Liu, Jinxin and Shi, Linchun
Journal: Mitochondrial DNA. Part B, Resources (2024): 652-656
Exploring mitochondrial DNA copy number in circulating cell-free DNA and extracellular vesicles across cardiovascular health status: A prospective case-control pilot study.
Authors: Rucci, Chiara and de Simone, Gaia and Salathia, Saniya and Casadidio, Cristina and Censi, Roberta and Bordoni, Laura
Journal: FASEB journal : official publication of the Federation of American Societies for Experimental Biology (2024): e23672
Mitochondrial DNA mutations in extremely preterm infants with bronchopulmonary dysplasia.
Authors: Jeong, Jiyoon and Lee, Yeonmi and Han, Jongsuk and Kang, Eunju and Kim, Deokhoon and Kim, Ki-Soo and Kim, Ellen Ai-Rhan and Lee, Byong Sop and Jung, Euiseok
Journal: Gene (2024): 148337
Association of barium deficiency with Type 2 diabetes mellitus incident risk was mediated by mitochondrial DNA copy number (mtDNA-CN): A follow-up study.
Authors: Zhang, Yiqin and Ye, Jing and Zhou, Lina and Xuan, Xianfa and Xu, Liping and Cao, Xia and Lv, Tianyu and Yan, Jianhua and Zhang, Siyu and Wang, Yuxin and Huang, Qingyu and Tian, Meiping
Journal: Metallomics : integrated biometal science (2024)
Tools for editing the mammalian mitochondrial genome.
Authors: Moraes, Carlos T
Journal: Human molecular genetics (2024): R92-R99
PGC-1α participates in regulating mitochondrial function in aged sarcopenia through effects on the Sestrin2-mediated mTORC1 pathway.
Authors: Fu, Yimin and Tao, Lei and Wang, Xiaojun and Wang, Binyou and Qin, Weilin and Song, Lei
Journal: Experimental gerontology (2024): 112428
6PPD induced cardiac dysfunction in zebrafish associated with mitochondrial damage and inhibition of autophagy processes.
Authors: Fang, Chanlin and Di, Shanshan and Yu, Yundong and Qi, Peipei and Wang, Xinquan and Jin, Yuanxiang
Journal: Journal of hazardous materials (2024): 134357
Assessing the joint effects of mitochondrial genes and physical activity on the psychiatric phenotype of subjective well-being based on the UK Biobank data.
Authors: Shi, Panxing and Wang, Bingyi and Shi, Sirong and Chu, Xiaoge and Liu, Chen and Kang, Meijuan and Hui, Jingni and Gou, Yifan and Zhou, Ruixue and Liu, Ye and Jia, Yumeng and Zhang, Feng and Wen, Yan
Journal: European archives of psychiatry and clinical neuroscience (2024)