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MitoDNA™ Red 610

The fluorescence response of MitoDNA™ Red 610 (5 µM) in HeLa cells was assessed before and after DNase treatment. Fluorescence intensities were monitored using fluorescence microscopy.
The fluorescence response of MitoDNA™ Red 610 (5 µM) in HeLa cells was assessed before and after DNase treatment. Fluorescence intensities were monitored using fluorescence microscopy.
The fluorescence response of MitoDNA™ Red 610 (5 µM) in HeLa cells was assessed before and after DNase treatment. Fluorescence intensities were monitored using fluorescence microscopy.
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Physical properties
Molecular weight344.93
SolventDMSO
Spectral properties
Excitation (nm)508
Emission (nm)607
Storage, safety and handling
H-phraseH303, H313, H333
Hazard symbolXN
Intended useResearch Use Only (RUO)
R-phraseR20, R21, R22
StorageFreeze (< -15 °C); Minimize light exposure

OverviewpdfSDSpdfProtocol


See also: Mitochondria
Molecular weight
344.93
Excitation (nm)
508
Emission (nm)
607
There are very few probes that can be effectively used to detect mitochondrial deoxyribonucleic acid (mtDNA). The common fluorescent DNA probes (such as DAPI, Hoechst or SYBR® Green) lack the specificity to target mitochondria. They predominantly stain nuclei. MitoDNA™ Red 610 is a cell permeable dye that specifically stains mtDNA in live cells. It provides an efficient way of labeling mtDNA for the dynamic imaging of mtDNA in live cells. MitoDNA™ Red 610 has a large Stokes Shift that gives great signal-to-noise ratio and can be easily used for multiplex staining in cells with other fluorescent imaging probes. mtDNA is a small circular DNA found within mitochondria present in the cytoplasm of a cell. This DNA is supplementary to the nucleic acid material found in the nucleus of each cell. The mtDNA codes for 37 genes that promote the proper functioning of some cells. The mitochondria synthesize adenosine triphosphate (ATP) through oxidative phosphorylation and encode information for the synthesis of enzymes, transfer ribonucleic acid (tRNA), and ribosomal RNA (rRNA). Disorders of mtDNA and mutations in its genes can predispose to health problems like age-related hearing loss, diabetes, and brain, heart, and liver failure, among other conditions. Moreover, mtDNA and its associated mitochondrial disorders can predispose people to different types of cancers including lymphomas, leukemias, and breast, intestine, liver and kidney tumors etc.

Platform


Fluorescence microscope

Excitation490 nm
Emission610 nm
Recommended plateBlack wall/clear bottom

Example protocol


AT A GLANCE

Important Note

Before using MitoDNA™ Red 610 for the first time, allow it to thaw at room temperature. Then, briefly centrifuge it to collect the dried pellet.

Protocol Summary
  1. Prepare cells in a growth medium.

  2. Stain cells with MitoDNA™ Red 610 working solution.

  3. Incubate samples for 5 to 15 minutes at 37 °C.

  4. Monitor fluorescence intensity at Ex/Em = 490/610 nm.

PREPARATION OF STOCK SOLUTIONS

Unless otherwise noted, all unused stock solutions should be divided into single-use aliquots and stored at -20 °C after preparation. Avoid repeated freeze-thaw cycles

MitoDNA™ Red 610 Stock Solution
  1. Prepare a 5 to 10 mM MitoDNA™ Red 610 stock solution in DMSO. For example, add 290 μL of DMSO to the MitoDNA™ Red 610 vial to create a 10 mM stock solution.

    Note: Prepare a single aliquot of the unused MitoDNA™ Red 610 stock solution and store it at ≤ -20 º C, protected from light. Avoid repeated freeze-thaw cycles.

PREPARATION OF WORKING SOLUTION

MitoDNA™ Red 610 Working Solution
  1. Prepare a 5 to 10 μM working solution by diluting the MitoDNA™ Red 610 stock solution in Hanks' solution with 20 mM HEPES buffer (HHBS).

    Note: For optimal results, use this solution within a few hours of preparation.

    Note: Cover the working solution with foil or store it in a dark place to protect it from light.

SAMPLE EXPERIMENTAL PROTOCOL

  1. Plate the cells in a 96-well plate with black walls and a clear bottom.

  2. Remove the cell culture medium and add 100 µL of MitoDNA™ Red 610 working solution directly to the cells.

  3. Incubate the cells at 37°C for 5-15 minutes, protected from light.

    Note: The concentration and incubation time of MitoDNA™ Red 610 may vary depending on the cell line. Test different concentrations to determine the optimal dose.

  4. Remove the dye working solution and wash the cells twice with HHBS buffer.

  5. Add HHBS buffer and analyze the cells using a fluorescence microscope with excitation/emission settings of 490/610 nm.

Calculators


Common stock solution preparation

Table 1. Volume of DMSO needed to reconstitute specific mass of MitoDNA™ Red 610 to given concentration. Note that volume is only for preparing stock solution. Refer to sample experimental protocol for appropriate experimental/physiological buffers.

0.1 mg0.5 mg1 mg5 mg10 mg
1 mM289.914 µL1.45 mL2.899 mL14.496 mL28.991 mL
5 mM57.983 µL289.914 µL579.828 µL2.899 mL5.798 mL
10 mM28.991 µL144.957 µL289.914 µL1.45 mL2.899 mL

Molarity calculator

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Spectrum


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spectrum

Spectral properties

Excitation (nm)508
Emission (nm)607

Product Family


NameExcitation (nm)Emission (nm)
MitoDNA™ Red 680597681
MitoDNA™ Red 710511707

Images


References


View all 50 references: Citation Explorer
A prognostic model of idiopathic pulmonary fibrosis constructed based on macrophage and mitochondria-related genes.
Authors: Bao, Yu and Yang, Shiyuan and Zhao, Hailan and Wang, Yezhen and Li, Ke and Liu, Xue and Zhang, Wei and Zhu, Xue
Journal: BMC pulmonary medicine (2024): 176
MSC-derived mitochondria promote axonal regeneration via Atf3 gene up-regulation by ROS induced DNA double strand breaks at transcription initiation region.
Authors: Zhang, Yingchi and Xu, Tao and Xie, Jie and Wu, Hua and Hu, Weihua and Yuan, Xuefeng
Journal: Cell communication and signaling : CCS (2024): 240
Mitochondria function in cytoplasmic FeS protein biogenesis.
Authors: Dancis, Andrew and Pandey, Ashutosh K and Pain, Debkumar
Journal: Biochimica et biophysica acta. Molecular cell research (2024): 119733
Mitochondria transcription and cancer.
Authors: Lei, Tang and Rui, Yu and Xiaoshuang, Zhou and Jinglan, Zhang and Jihong, Zhang
Journal: Cell death discovery (2024): 168
Mitochondria-mediated Ferroptosis in Diseases Therapy: From Molecular Mechanisms to Implications.
Authors: Feng, Fuhai and He, Shasha and Li, Xiaoling and He, Jiake and Luo, Lianxiang
Journal: Aging and disease (2024): 714-738
The Role Played by Mitochondria in Polycystic Ovary Syndrome.
Authors: Sun, Chang and Zhao, Shanshan and Pan, Zimeng and Li, Jing and Wang, Yasong and Kuang, Hongying
Journal: DNA and cell biology (2024): 158-174
The lysosomal β-glucocerebrosidase strikes mitochondria: implications for Parkinson's therapeutics.
Authors: Rubilar, Juan Carlos and Outeiro, Tiago Fleming and Klein, Andrés D
Journal: Brain : a journal of neurology (2024)
Identification of key mitochondria-related genes and their relevance to the immune system linking Parkinson's disease and primary Sjögren's syndrome through integrated bioinformatics analyses.
Authors: Zong, Yuan and Yang, Yi and Zhao, Jiawen and Li, Lei and Luo, Danyang and Hu, Jiawei and Gao, Yiming and Xie, Xianfei and Shen, Linhui and Chen, Sheng and Ning, Li and Jiang, Liting
Journal: Computers in biology and medicine (2024): 108511
A novel mitochondria-related core gene signature to predict the prognosis and evaluate tumour microenvironment in CESC single-cell validation.
Authors: Ying, Lingxiao and Kong, Lin and Qiu, Xiaoxiao and Cheng, Aihua and Wang, Qijun and Xiu, Limeng and Shi, Jinmei and Tao, Yanfei and Chai, Zhihong
Journal: Journal of cellular and molecular medicine (2024): e18265
Balbiani body of basal insects is potentially involved in multiplication and selective elimination of mitochondria.
Authors: Sekula, Malgorzata and Tworzydlo, Waclaw and Bilinski, Szczepan M
Journal: Scientific reports (2024): 8263