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SDA alkyne

SDA alkyne contains both diazirine photoaffinity moiety and alkyne functional group. It is an excellent building block to introduce photoaffinity function into an azide-modified biomolecule via the well-known click chemistry. Diazirines are known for their ability to undergo photochemical reactions when exposed to ultraviolet (UV) light, specifically by forming highly reactive carbene intermediates that react with nearby molecules, forming covalent bonds. This property makes diazirines useful for studying protein-protein, protein-nucleic acid interactions, ligand-receptor binding, and other biomolecular interactions. It's important to note that diazirines are highly reactive and can be challenging to handle due to their instability. They require careful storage and handling, typically in a controlled environment. Additionally, the choice of diazirine-containing compound and the conditions of the photolabeling experiment must be carefully optimized to achieve desired results while minimizing non-specific reactions.

Product family

NameExcitation (nm)Emission (nm)Extinction coefficient (cm -1 M -1)Correction Factor (280 nm)
AMCA Alkyne346434190000.153
XFD488 alkyne *Same Structure to Alexa Fluor™ 488 alkyne*499520710000.11
ICG alkyne7898132300000.076
Cy3B alkyne56057112000010.069
XFD647 Alkyne6506712700000.03
XFD350 alkyne343441190000.19
XFD405 alkyne40142135,0000.70
XFD430 alkyne43254015,0000.28
XFD514 alkyne518543800000.18
XFD546 alkyne5615721120000.12
XFD532 alkyne534553810000.09
XFD568 alkyne579603913000.46
XFD594 alkyne590618900000.56
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References

View all 50 references: Citation Explorer
A tumor-targetable NIR probe with photoaffinity crosslinking characteristics for enhanced imaging-guided cancer phototherapy.
Authors: Sun, Rui and Zhang, Yuqi and Gao, Yinjia and Zhao, Meng and Wang, Anna and Zhu, Jinfeng and Cheng, Xiaju and Shi, Haibin
Journal: Chemical science (2023): 2369-2378
Photoaffinity labelling-based chemoproteomic strategy identifies PEBP1 as the target of ethyl gallate against macrophage activation.
Authors: Yu, Wei and Liao, Min and Chen, Yang and Xue, Rui and Shi, Xiao-Meng and Liu, Dan and Zhuo, Fang-Fang and Tang, Hui and Lu, Zhi-Yuan and Tu, Peng-Fei and Han, Bo and Jia, Xin and Zeng, Ke-Wu
Journal: Chemical communications (Cambridge, England) (2023): 1022-1025
Pepstatin-Based Probes for Photoaffinity Labeling of Aspartic Proteases and Application to Target Identification.
Authors: Chen, Suyuan and Liang, Chunguang and Li, Hongli and Yu, Weimeng and Prothiwa, Michaela and Kopczynski, Dominik and Loroch, Stefan and Fransen, Marc and Verhelst, Steven H L
Journal: ACS chemical biology (2023): 686-692
Exploring a chemical scaffold for rapid and selective photoaffinity labelling of non-ribosomal peptide synthetases in living bacterial cells.
Authors: Ishikawa, Fumihiro and Konno, Sho and Uchiyama, Yuko and Kakeya, Hideaki and Tanabe, Genzoh
Journal: Philosophical transactions of the Royal Society of London. Series B, Biological sciences (2023): 20220026
A photoaffinity glycan-labeling approach to investigate immunoglobulin glycan-binding partners.
Authors: Holborough-Kerkvliet, Miles D and Mucignato, Greta and Moons, Sam J and Psomiadou, Venetia and Konada, Rohit S R and Pedowitz, Nichole J and Pratt, Matthew R and Kissel, Theresa and Koeleman, Carolien A M and Tjokrodirijo, Rayman T N and van Veelen, Petrus A and Huizinga, Thomas and van Schie, Karin A J and Wuhrer, Manfred and Kohler, Jennifer J and Bonger, Kimberly M and Boltje, Thomas J and Toes, Reinaldus E M
Journal: Glycobiology (2023): 732-744
Page updated on November 16, 2024

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Physical properties

Molecular weight

165.20

Solvent

DMSO

Storage, safety and handling

H-phraseH303, H313, H333
Hazard symbolXN
Intended useResearch Use Only (RUO)
R-phraseR20, R21, R22

Storage

Freeze (< -15 °C); Minimize light exposure
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