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ATTO 565 NHS ester

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Physical properties
Molecular weight708.12
SolventDMSO
Spectral properties
Correction Factor (260 nm)0.34
Correction Factor (280 nm)0.16
Extinction coefficient (cm -1 M -1)120000
Excitation (nm)563
Emission (nm)589
Quantum yield0.90
Storage, safety and handling
H-phraseH303, H313, H333
Hazard symbolXN
Intended useResearch Use Only (RUO)
R-phraseR20, R21, R22
StorageFreeze (< -15 °C); Minimize light exposure

OverviewpdfSDSpdfProtocol


Molecular weight
708.12
Correction Factor (260 nm)
0.34
Correction Factor (280 nm)
0.16
Extinction coefficient (cm -1 M -1)
120000
Excitation (nm)
563
Emission (nm)
589
Quantum yield
0.90
ATTO 565 NHS ester is a commonly used amine-reactive rhodamine dye. It might be used for labeling peptides, proteins and other amino-containing compounds such as amino-modified oligos. It readily reacts with compounds containing amino groups, forming a chemically stable amide bond between the dye and amino compounds. The optimum pH range for NHS-ester coupling is pH 8.0 – 9.0. At this pH, amino groups of proteins (such as the ε-amino groups of lysines) are unprotonated enough for fast coupling. ATTO 565 NHS ester has strong absorption, high fluorescence quantum yield and high thermal/photostability. However, it has low water solubility. For the applications that require high water solubility, you may consider iFluor® 568 succinimidyl ester that has almost identical fluorescence properties with greatly enhanced water solubility. In addition, the protein conjugates made from iFluor® 568 succinimidyl ester are much brighter than those from ATTO 565 NHS ester.

Calculators


Common stock solution preparation

Table 1. Volume of DMSO needed to reconstitute specific mass of ATTO 565 NHS ester to given concentration. Note that volume is only for preparing stock solution. Refer to sample experimental protocol for appropriate experimental/physiological buffers.

0.1 mg0.5 mg1 mg5 mg10 mg
1 mM141.219 µL706.095 µL1.412 mL7.061 mL14.122 mL
5 mM28.244 µL141.219 µL282.438 µL1.412 mL2.824 mL
10 mM14.122 µL70.61 µL141.219 µL706.095 µL1.412 mL

Molarity calculator

Enter any two values (mass, volume, concentration) to calculate the third.

Mass (Calculate)Molecular weightVolume (Calculate)Concentration (Calculate)Moles
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Spectrum


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spectrum

Spectral properties

Correction Factor (260 nm)0.34
Correction Factor (280 nm)0.16
Extinction coefficient (cm -1 M -1)120000
Excitation (nm)563
Emission (nm)589
Quantum yield0.90

Product Family


NameExcitation (nm)Emission (nm)Extinction coefficient (cm -1 M -1)Quantum yieldCorrection Factor (260 nm)Correction Factor (280 nm)
ATTO 488 NHS ester499520900000.800.250.10
ATTO 532 NHS ester5315521150000.900.220.11
ATTO 647 NHS ester6466661200000.200.080.04
ATTO 647N NHS ester6456631500000.6510.060.05
ATTO 594 NHS ester6026211200000.850.260.51
ATTO 514 NHS ester510531115,0000.850.210.08

Images


References


View all 50 references: Citation Explorer
Time-resolved fluorescence anisotropy with Atto 488-labeled phytochrome Agp1 from Agrobacterium fabrum.
Authors: Elkurdi, Afaf and Guigas, Gernot and Hourani-Alsharafat, Latifa and Scheerer, Patrick and Nienhaus, Gerd Ulrich and Krauß, Norbert and Lamparter, Tilman
Journal: Photochemistry and photobiology (2024): 561-572
Fluorescence quenching-based immunological probe for ticagrelor monitoring.
Authors: Zhang, Shengshuo and Cheng, Yueqing and Gao, Yujie and Zou, Yujie and Xiao, Weiling and Li, Tianyi and Li, Mei and Yu, Bowen and Dong, Jinhua
Journal: Frontiers in bioengineering and biotechnology (2023): 1295406
Interactions of the Kv1.1 Channel with Peptide Pore Blockers: A Fluorescent Analysis on Mammalian Cells.
Authors: Orlov, Nikita A and Kryukova, Elena V and Efremenko, Anastasia V and Yakimov, Sergey A and Toporova, Victoria A and Kirpichnikov, Mikhail P and Nekrasova, Oksana V and Feofanov, Alexey V
Journal: Membranes (2023)
Improved enzymatic labeling of fluorescent in situ hybridization probes applied to the visualization of retained introns in cells.
Authors: Xiao, Wen and Yeom, Kyu-Hyeon and Lin, Chia-Ho and Black, Douglas L
Journal: RNA (New York, N.Y.) (2023)
Measuring Photophysical Transition Rates with Fluorescence Correlation Spectroscopy and Antibunching.
Authors: Sakhapov, Damir and Gregor, Ingo and Karedla, Narain and Enderlein, Jörg
Journal: The journal of physical chemistry letters (2022): 4823-4830
Combining Fluorescence Fluctuations and Photobleaching to Quantify Surface Density.
Authors: Sefkow-Werner, Julius and Migliorini, Elisa and Picart, Catherine and Wahyuni, Dwiria and Wang, Irène and Delon, Antoine
Journal: Analytical chemistry (2022): 6521-6528
A Model of F-actin Organization in Granuloreticulopodia in Foraminifera: Morphogenetic and Evolutionary Implications from Novel Fluorescent and Polarised Light Observations.
Authors: Goleń, Jan and Tyszka, Jarosław and Godos, Karolina and Janse, Max
Journal: Protist (2022): 125886
Fractional CO2 laser ablation leads to enhanced permeation of a fluorescent dye in healthy and mycotic nails-An imaging investigation of laser-tissue effects and their impact on ungual drug delivery.
Authors: Ortner, Vinzent Kevin and Nguyen, Nhi and Brewer, Jonathan R and Solovyeva, Vita and Haedersdal, Merete and Philipsen, Peter Alshede
Journal: Lasers in surgery and medicine (2022): 861-874
Fluorescent opioid receptor ligands as tools to study opioid receptor function.
Authors: Giakomidi, Despina and Bird, Mark F and Guerrini, Remo and Calo, Girolamo and Lambert, David G
Journal: Journal of pharmacological and toxicological methods (2022): 107132
Two-Photon-Excited Single-Molecule Fluorescence Enhanced by Gold Nanorod Dimers.
Authors: Lu, Xuxing and Punj, Deep and Orrit, Michel
Journal: Nano letters (2022): 4215-4222