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AAT Bioquest

What are the different types of agarose gel used in western blot?

Posted June 24, 2024


Answer

In western blotting, agarose gels are composed of two types: the stacking gel and the separating gel. The stacking gel has a slightly acidic pH (approximately 6.8) and contains a lower concentration of acrylamide. This creates a porous gel that doesn't separate proteins well but allows them to form distinct, narrow bands. The separating gel is positioned below the stacking gel, has a basic pH (approximately 8.8) and a higher concentration of polyacrylamide. This results in narrower pores, enabling better separation of proteins based on their size. Smaller proteins move more rapidly through this gel than larger ones.

Additional resources

SDS agarose gels for analysis of proteins

Western Blotting Assays

iFluor® 488 goat anti-rabbit IgG (H+L)