| Basis of Comparison | Prokaryotic Gene Expression | Eukaryotic Gene Expression |
| Definition | Refers to the process by which information from the prokaryotic genes is used to synthesize a functional gene product | Refers to the process by which information from eukaryotic genes is used to synthesize a functional gene product |
| Occurrence | Entire process occurs in the cytoplasm | A part of the process (transcription) occurs inside the nucleus, another part of the process (translation) occurs in the cytoplasm |
| Regulation | Regulation occurs at the transcriptional level | Regulation may occur at epigenetic, transcriptional, post-transcriptional, translational, and post-translational levels |
| Assembly of transcription initiation factors | Transcription initiation factors do not assemble with the initiation complex | Transcription initiation factors assemble with the initiation complex |
| Temporal segregation | Transcription and translation occur simultaneously | Transcription and translation occur at different times |
| Promoter elements | Contains only 3 promoter elements | Contains a much larger set of promoter elements including the TATA box |
| Types of RNA polymerase | Uses a single type of RNA polymerase | Uses 3 types of RNA polymerases |
| Type of mRNA produced | Results in polycistronic mRNA | Results in monocistronic mRNA |
| Post-Transcriptional Modifications | Does not include post-transcriptional modifications | Includes post-transcriptional modifications |