How do I choose primers for Sanger sequencing?
Posted July 11, 2022
Answer
Choosing the right primers is a crucial factor in successful automated Sanger DNA sequencing. Here are a few things to keep in mind when choosing primers for Sanger sequencing:
- Length of the primer should be in the range of 18 and 24 bases.
- The primer must have a GC content of about 45-55%.
- The primer must have a GC-lock on the 3' end.
- The melting temperature of the primer should be higher than 50°C but lower than 65°C.
- The primer should be located at least 50-60 bases upstream of your sequence of interest.
- The primer should not include poly base regions.
- ·Check primer for specificity in annealing to template.
- Avoid primers with secondary structures or the potential to self-hybridize.
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