How do I increase the intensity of PCR bands?
Posted November 24, 2020
Answer
If you are experiencing faint or no bands, try the following tips to increase band intensity:
- Use the appropriate number of PCR cycles, usually the number of cycles is carried out 25-35 times, but in cases where the template concentration is low use more cycles
- Optimize the extension time for successful replication of the target, for most PCR applications an extension time of 1 min/kb is sufficient
- Make sure there is sufficient annealing time for primers to bind to the template
- Optimize annealing temperature, primers cannot bind to the template if the temperature is too high
- Use a denaturation temperature of 95 °C
- Optimize the denaturation time, if the denaturation time is too long or too short, then the DNA might degrade or not completely denature, respectively
- Each dNTP should have a concentration of 200 µM
- Optimize your primer concentration, the concentration of each primer should range between 0.1 to 0.5 µM, but for most PCR applications 0.2 µM is sufficient
- Avoid cross-contamination, contaminated dNTPS and impure water, always use fresh nuclease-free water
- Make sure to use sufficient amounts of magnesium, for PCR a typical final concentration of magnesium ranges from 1 to 4 mM
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