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AAT Bioquest

How do I determine the amplification efficiency of my qPCR assay?

Posted March 24, 2022


Answer

To determine the amplification efficiency of your qPCR assay, you must first make five serial dilutions of your target molecule in 2-fold, 5-fold, and 10-fold serial dilutions.

Use each serial dilution in separate real-time reactions to determine their threshold cycle values (Ct values).

Plot the Ct values obtained on a logarithmic scale along with corresponding concentrations.

Generate a linear regression curve through the data points and calculate the slope of the trend line.

Amplification efficiency of your qPCR assay can be calculated using the equation E = -1+10(-1/slope).

Additional resources

How good is a PCR efficiency estimate: Recommendations for precise and robust qPCR efficiency assessments

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