Exosomes
Illustration of endosome stages, including pathways to lysosome fusion and exosome development. Figure made in BioRender.
As nanoparticles, exosomes range in size from 30-150 nm, approximately 1/1000 of the size of a cell. They are transporters of cell-specific lipids, proteins, amino acids, metabolites, and genetic material that are necessary to surrounding cells, creating a major role in the recipient cell's programming. Because of the different bioparticles being transported, exosomes have potential to provide information on a plethora of cell functions, processes and in use as biomarkers for targeted therapies.
Exosomes & Cellular Activity
To understand exosomes, we must first understand endosomes. Endosomes are intracellular vesicles (ICV) from which exosomes are created. An inward invagination of a cell's membrane creates the ICV, where it will collect the necessary biomolecules through the endosome membrane thus creating an exosome inside, which will later be released into the extracellular fluids to fuse with a target cell.
The process by which secretory vesicles fuse with the plasma membrane is called exocytosis, expelling necessary components into the extracellular fluid (ECF). Alternatively, endocytosis is the releasing of contents, or the engulfing of the vesicle, into another cell. Genetic material such as DNA, messenger RNA (mRNA) and microRNA (miRNA), along with surface proteins and lipids come together in this process, fusing inside of the lipid vesicle, with specific predetermined targets outside of the cell to carry out regulation, growth, immunity and more. As the cell components fuse into the endosome, some of the membrane is taken up which creates the membrane of the exosome. Furthermore, compartments inside the endosomes sort the various proteins into additional vesicles, called intraluminal vesicles (ILVs), creating what is called multivesicular bodies, or MVBs. It is the fusion of these MVBs with the plasma membrane of a cell that will eventually secrete the exosome.
Endosomes exist in a few different stages but the two most prominent in exosome creation are early endosomes, which become early-sorting endosomes (ESEs) that mature into late endosomes, the secondary, containing the MVBs. Within the original cell, endosomes can go through several pathways, recycling and sorting vesicles and components to the nucleus, via the trans-Golgi network, into lysosomes for removal, or as future exosomes.
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Illustration of the basic aspects and general composition of an exosome, showing extracellular matrix proteins and receptors, as well as common enclosed materials; the 'cargo'. Figure made in BioRender.
If fusing with the cell membrane, the defined cargo will be released into the cytosol of the cell. Internalization of the exosome into the cell results in two pathways; one pathway is delivery, where the cargo will go directly to the necessary target. The other is endosomal, where the exosome enters the early endosome stage, and later breaks down for the overall health of the recipient cell. Each transaction is highly specialized for what that cell needs - whether it be to maintain a healthy state of homeostasis, or otherwise. There are a number of factors that determine the abundance of exosomes developed and the nature of their existence. The cell source, including age and gender/sex, health or disease status, and any physiological conditions will affect how and where exosomes occur.
Exosomal delivery is highly studied today. The application of EVs features their use as biomarkers, in therapy and drug delivery, for vaccines, and in cosmetics. Scientists are able to produce and harvest exosomes in the lab, loading them with medicine and directly injecting them into a patient to target precise drug delivery. Exosomes can display an affinity for a certain type of tissue, making this targeted technique extremely useful.
Exosome Processing
Exosomes from 100,000 HeLa cells (cultured for 16 hours in 10 mL serum-free medium) were isolated using ReadiPrep™ Exosome Isolation Kit and detected using the Cell Navigator™ Flow Cytometric Exosome Staining Kit.
To isolate, scientists use techniques such as immunoaffinity capture (beads), precipitation, differential centrifugation and/or size exclusion filtration, each of which comes with its advantages and disadvantages. One of the oldest, most-used methods is the use of immunoaffinity beads, typically coated with specific antibodies that bind to exosomes. The most common marker proteins used are tetraspanins CD9, CD63 and CD81, with some use of CD37, CD53 and CD82. These tetraspanins are easy to identify and are capable of separating EVs from complex samples and yield the highest purities.
Once the exosomes are bound to the conjugates, the RNA, DNA, or various proteins can be isolated, or more antibodies can be added to the exterior of those exosomes attached to the magnetic bead and then flow cytometry can be carried out. Precipitation provides a quick method of isolating exosomes but does not provide great purity. At this level, both DNA and RNA can be isolated. Differential centrifugation is found to be one of the best methods to isolate exosomes, especially in the way of purities, although it is time-consuming. Finally, size-exclusion filtration proves to be the best and purest technique by use of chromatography, but it is not quantitative and produces a lower yield. Knowing the distinct pore size of a membrane and filtering out exosomes in this way is an alternative approach, but clogging tends to be a common issue, and it is time-consuming.
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Exosome Visualization
Live HeLa cells were stained with iFluor® 555-Wheat Germ Agglutinin (WGA) Conjugate (red) at 5 µg/mL for 30 minutes followed by Hoechst 33342 (blue). Image was acquired using fluorescence microscopy using Cy3/TRITC and DAPI filter set.
Quantification of exosomes will continue to be an active discipline of study amongst researchers, to detect the slightest of pathological changes with minimal preparation of a given sample, and with high yield and purity. Currently, technologies being used to quantify exosomes look at factors such as the stoichiometry of miRNAs within each exosome. Advanced nanoparticle tracking analysis uses light scattering, which determines the size and count of exosomes within a suspension flow chamber. Another method called Tunable Resistive Pulse Sensing (TRPS) provides information on the concentration and size of the exosomes in solution through a distinct nanopore. Other techniques include surface plasmon resonance, where concentration of EVs in solution can be determined by use of surface-based sensors, and enzyme-linked immunosorbent assay, or ELISA, a broader look at the specific markers associated with particular materials inside the exosome.
Further analyzation of EVs can be accomplished by methods such as the Western blot, mass spectrometry, electron microscopy, or flow cytometry. Like isolation, the ways in which scientists can analyze exosomes have their benefits and drawbacks. With Western blots, though providing the presence of EV markers, researchers are unable to look at proteins at a single level and this technique requires large samples and can be laborious. Mass spectrometry is also unable to be analyzed at a single level, is more sensitive and requires expertise in the set-up and operation. Electron microscopy is useful in immunostaining but has its challenges and can be studied only a few at a time.
Flow cytometry, by far the most robust of the commonly used platforms, allows for the study of multiple surface markers on EVs to be screened at one time, is quick and widely available, and goes as far as measuring the individual properties of the particles involved. Like everything else in a lab setting, there is room for error and results can be affected by less suitable storage methods or contamination issues.
Table 1. iFluor® wheat germ agglutinin conjugates for live and fixed cells.
Product name ▲ ▼ | Permeability ▲ ▼ | Ex/Em (nm) ▲ ▼ | Filter Set ▲ ▼ | Unit Size ▲ ▼ | Cat No. ▲ ▼ |
iFluor® 350-Wheat Germ Agglutinin Conjugate | Membrane-impermeant | 345/450 | DAPI | 1 mg | 25525 |
iFluor® 488-Wheat Germ Agglutinin Conjugate | Membrane-impermeant | 491/516 | FITC | 1 mg | 25530 |
iFluor® 532-Wheat Germ Agglutinin Conjugate | Membrane-impermeant | 537/560 | Cy3/TRITC | 1 mg | 25532 |
iFluor® 555-Wheat Germ Agglutinin Conjugate | Membrane-impermeant | 557/570 | Cy3/TRITC | 1 mg | 25539 |
iFluor® 594-Wheat Germ Agglutinin Conjugate | Membrane-impermeant | 588/604 | Texas Red | 1 mg | 25550 |
iFluor® 647-Wheat Germ Agglutinin Conjugate | Membrane-impermeant | 656/670 | Cy5 | 1 mg | 25559 |
iFluor® 680-Wheat Germ Agglutinin Conjugate | Membrane-impermeant | 684/701 | Cy5 | 1 mg | 25560 |
iFluor® 700-Wheat Germ Agglutinin Conjugate | Membrane-impermeant | 690/713 | Cy5 | 1 mg | 25561 |
iFluor® 750-Wheat Germ Agglutinin Conjugate | Membrane-impermeant | 757/779 | Cy7 | 1 mg | 25562 |
iFluor® 790-Wheat Germ Agglutinin Conjugate | Membrane-impermeant | 787/812 | Cy7 | 1 mg | 25563 |
Applications
MSCs-ApoEVs promote fusion and apoptosis ratio of C2C12 myoblasts in vitro. The representative fluorescence images of C2C12 myoblasts after MSCs-ApoEVs treatment, MSCs-ApoEVs were pre-stained by PKH26, actin by Phalloidin-iFluor® 488 conjugate, and nuclei by Hoechst. Scale bar indicates 50 μm. Source: MSCs-derived apoptotic extracellular vesicles promote muscle regeneration by inducing Pannexin 1 channel-dependent creatine release by myoblasts by Qingyuan Ye, Xinyu Qiu, Jinjin Wang, Boya Xu, Yuting Su, Chenxi Zheng, Linyuan Gui, Lu Yu, Huijuan Kuang, Huan Liu, Xiaoning He, Zhiwei Ma, Qintao Wang & Yan Jin. International Journal of Oral Science, January 2023.
Exosomes are capable of regenerating tissue when secreted from stem cells, with over 1000 growth factors observed, amplifying the possibilities of studies related to stem cell research. In the way of health and beauty, exosomes are used to help rebuild collagen and elastin, strengthening skin and providing the much-desired “glow” amongst consumers. It is the regenerative qualities and capabilities of exosomes that have brought exosomes to the forefront of many new advancements and possibilities of studies.
Some of the negative roles that exosomes play include the spread of viruses (i.e.: Hepatitis B), their association with apoptosis in T-cells resulting in immune cell deficiencies, and the eventual development of different neurological disorders is linked to the spread of exosomes within the body, such as Parkinsons and Alzheimer's. Moreover, their involvement in heart failure, liver disease, diabetes, and cancer has also been observed. Tumor cells have been studied and proven to release exosomes that contain cancer signals that spread throughout the body. On the other hand, tumors secreting exosomes can also be beneficial in signaling to immune cells and inducing death in harmful cells.
With much more diagnostical research to still be done, additional advancements in the knowledge and understanding of how exosomes function, their heterogeneity, and the importance of their specialized cargo, will continue to be made.
Table 2. DiI, DiO, DiD and DiR dyes
Cat# ▲ ▼ | Product Name ▲ ▼ | Ex (nm) ▲ ▼ | Em (nm) ▲ ▼ | Unit Size ▲ ▼ |
22042 | DiOC16(3) perchlorate [3,3-Dihexadecyloxacarbocyanine perchlorate] | 483 | 501 | 25 mg |
22102 | DiI perchlorate [1,1-Dioctadecyl-3,3,3,3-tetramethylindocarbocyanine perchlorate] *CAS 41085-99-8* | 500 | 564 | 100 mg |
22034 | DiD Perchlorate *UltraPure Grade* | 646 | 663 | 25 mg |
22070 | DiR iodide [1,1-dioctadecyl-3,3,3,3-tetramethylindotricarbocyanine iodide] | 754 | 778 | 25 mg |
Product Ordering Information
Table 4. Lipophilic tracers for labeling cell membranes in live and fixed cells and tissues.
Product Name ▲ ▼ | Ex/Em (nm) ▲ ▼ | Filter Set ▲ ▼ | Unit Size ▲ ▼ | Cat No. ▲ ▼ |
DiOC2(3) iodide [3,3-Diethyloxacarbocyanine iodide] | 482/500 | FITC | 25 mg | 22038 |
DiOC3(3) iodide [3,3-Dipropyloxacarbocyanine iodide] | 482/500 | FITC | 25 mg | 22039 |
DiOC7(3) iodide [3,3-Diheptyloxacarbocyanine iodide] | 482/500 | FITC | 25 mg | 22040 |
DiOC16(3) perchlorate [3,3-Dihexadecyloxacarbocyanine perchlorate] | 482/500 | FITC | 25 mg | 22042 |
DiOC5(3) iodide [3,3-Dipentyloxacarbocyanine iodide] | 482/500 | FITC | 25 mg | 22045 |
DiOC6(3) iodide [3,3-Dihexyloxacarbocyanine iodide] | 482/500 | FITC | 25 mg | 22046 |
DiO perchlorate [3,3-Dioctadecyloxacarbocyanine perchlorate] | 482/500 | FITC | 25 mg | 22066 |
CytoTrace™ CM-DiI | 548/563 | TRITC | 10x50 µg | 22057 |
DiIC12(3) perchlorate [1,1-Didodecyl-3,3,3,3-tetramethylindocarbocyanine perchlorate] | 549/563 | TRITC | 25 mg | 22035 |
DiIC16(3) perchlorate [1,1-Dihexadecyl-3,3,3,3-tetramethylindocarbocyanine perchlorate] | 549/563 | TRITC | 25 mg | 22044 |
References
Exosomes
The biology, function, and biomedical applications of exosomes
Exosomes: biogenesis, biologic function and clinical potential
The exosome journey: from biogenesis to uptake and intracellular signalling
What Are Exosomes? | Clinical Applications
The Science of Exosomes
Exosomes
Exosome Quantification