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AAT Bioquest

What are the differences between B-DNA and Z-DNA?

Posted June 12, 2023


Answer

B-DNA and Z-DNA are two of three common DNA conformations. There are several significant differences between the two.

Basis of differentiation 

B-DNA

Z-DNA

Distinguishing characteristic 

Has a right-handed double helix structure with the two strands running in different directions

Has a left-handed double helix structure with a distinct zigzag appearance of backbone

Occurrence 

Commonly occurring DNA form under normal physiological conditions 

Less common DNA form under normal physiological conditions

Condition for formation 

Normal physiological conditions

High salt concentration

Helical width 

2 nm

1.8 nm

Number of base pairs in each turn 

Each turn comprises 10.5 base pairs with a length of 3.4 nm

Each turns comprises 12 base pairs with a length of 4.56 nm 

Distance between adjacent deoxyribonucleotides

0.34 nm

0.37 nm 

Structure of major groove

Wide and deep

Narrow and deep

Structure of minor groove

Narrow and deep

Wide and shallow

Stability 

Stable and easy to observe

Unstable and difficult to observe

Additional resources

DNA: Alternative Conformations and Biology

DNA and RNA Quantitation

Helixyte™ Green Fluorimetric dsDNA Quantitation Kit *Optimized for Broad Dynamic Range*