Basis for comparison | Sticky ends | Blunt ends |
| Formation | Formed when the restriction enzyme makes staggered cuts that are not directly opposite each other | Formed when the restriction enzyme makes a straight cut through both DNA strands in the same place |
| Physical characteristics | The ends feature overhangs that allow the two ends to base-pair and join together with another DNA strand | The ends are blunt and do not feature any overhangs or unpaired bases |
| Pairing | Have unpaired DNA nucleotide on either 5’- or 3’- strand | There is no unpaired DNA strand |
| Also known as | Cohesive ends | Non-cohesive ends |