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AAT Bioquest

XFD405 PEG4 DBCO

Product key features

  • Ex/Em: 401/421 nm
  • Extinction coefficient: 35,000 cm-1M-1
  • Reactive Group: DBCO
  • Copper-Free Bioorthogonal Labeling: Enables rapid and efficient azide conjugation via copper-free SPAAC
  • Stable Fluorescence: Resists photobleaching, pH-insensitive from pH 4 to 10, and minimal quenching when conjugated to proteins
  • Advanced PEG4 Spacer: Enhances solubility and minimizes steric hindrance for improved biocompatibility

Product description

XFD405, manufactured by AAT Bioquest, is a blue-fluorescent dye that is structurally identical to Alexa Fluor™ 405 (ThermoFisher). The incorporation of a PEG4 linker enhances its aqueous ability, and it is effectively excited by the 407 nm krypton laser line or the 408 nm violet laser diode, making it suitable for a range of fluorescence-based techniques. XFD405 is pH-insensitive across a wide range (pH 4 - 10) and exhibits minimal quenching when conjugated to proteins, ensuring consistent fluorescence signals in live-cell imaging. With an excitation maximum at 401 nm and emission at 422 nm, XFD405 is well-suited for multicolor flow cytometry and super-resolution microscopy (STORM), providing reliable performance in applications requiring distinct spectral separation and photostability.

The DBCO derivative of XFD405 is a highly reactive cycloalkyne optimized for copper-free click chemistry (SPAAC, strain-promoted azide-alkyne cycloaddition). This derivative exhibits a significantly higher reaction rate with azides compared to other cyclooctynes and copper-catalyzed click reactions (CuAAC). Uniquely, DBCO does not react with tetrazines, allowing for its use in bioorthogonal reactions alongside trans-cyclooctenes and tetrazines. For applications where the presence of copper is problematic, XFD405 DBCO serves as an effective alternative to copper-dependent fluorescent alkynes.

Spectrum

Page updated on April 15, 2025

Ordering information

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Catalog Number70015
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Additional ordering information

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Physical properties

Molecular weight

1438.82

Solvent

DMSO

Spectral properties

Correction Factor (260 nm)

0.23

Correction Factor (280 nm)

0.70

Extinction coefficient (cm -1 M -1)

35,000

Excitation (nm)

401

Emission (nm)

421

Storage, safety and handling

Certificate of OriginDownload PDF
H-phraseH303, H313, H333
Hazard symbolXN
Intended useResearch Use Only (RUO)
R-phraseR20, R21, R22

Storage

Freeze (< -15 °C); Minimize light exposure
UNSPSC12352200
Product Image
Product Image
Gallery Image 1
Schematic illustrating the strain‐promoted azide–alkyne cycloaddition (SPAAC) between a dibenzocyclooctyne (DBCO)–dye conjugate and an azide‐modified biomolecule. The DBCO’s ring strain drives the copper‐free reaction with the azide to form a stable 1,2,3-triazole linkage, avoiding potential toxicity of copper catalysts. This bioorthogonal labeling strategy proceeds efficiently under mild conditions, making it especially valuable for live‐cell imaging, in vivo studies, and other sensitive bioconjugation applications.