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PI Brite™

PI Brite™ is a propidium iodide (PI) analog developed by AAT Bioquest to improve the brightness and fixability of propidium iodide in cells. Under the same conditions, PI Brite™ is significantly brighter and better survives cell fixation process than PI. Propidium iodide is a fluorescent intercalating agent commonly used for staining cells with compromised membranes, such as dead cells, apoptotic or fixed cells. One of the primary applications of propidium iodide is for cell viability assays. Since it only stains cells with compromised cell membranes, it is often used to distinguish between live and dead cells in a population. In addition, PI is frequently used in flow cytometry to assess the cell cycle distribution of a population of cells. It allows researchers to analyze the DNA content of individual cells and identify different phases of the cell cycle. It binds to DNA by intercalating between the bases. PI is often used for detecting and quantifying DNA in various applications, such as flow cytometry, fluorescence microscopy, and gel electrophoresis.

Example protocol

AT A GLANCE

Spectral Properties

Ex/Em = 536/620 nm (bound to DNA)

SAMPLE EXPERIMENTAL PROTOCOL

Important Note

PI Brite™ staining is typically conducted as a final step after all other types of staining. This staining method is used to identify only dead cells. The procedure can be adjusted to work with most cell types, but factors such as growth medium, cell density, the presence of other cell types, and other variables may affect the staining process. Additionally, any residual detergent on glassware may impact the actual or perceived staining of many organisms. This can cause brightly stained material to appear in both solutions with and without cells present.

  1. Make a 1 to 10 mM PI Brite™ stock solution in high-quality DMSO.

    Note: Any unused PI Brite™ stock solution should be divided into single-use aliquots and stored at -20 °C, protected from light. Avoid repeated freeze-thaw cycles.

  2. Use the fixation protocol appropriate for your sample.

  3. Pellet cells by centrifugation and resuspend the cells in buffered salt solutions or media, with optimal dye staining at pH 7.4. Adherent cells in culture may be stained in situ on coverslips or in the cell culture wells. 

  4. Add PI Brite™ using the concentrations between 0.5 and 5 µM and incubate it for 15 to 60 minutes as a guide.

    Note: In initial experiments, it may be best to try several dye concentrations over the entire suggested range to determine the concentration that yields optimal staining.

Spectrum

References

View all 50 references: Citation Explorer
Propidium monoazide PCR, a method to determine OsHV-1 undamaged capsids and to estimate virus Lethal Dose 50.
Authors: Renault, Tristan and Faury, Nicole and Morga, Benjamin
Journal: Virus research (2024): 199307
Rapid and Accurate Quantification of Viable Lactobacillus Cells in Infant Formula by Flow Cytometry Combined with Propidium Monoazide and Signal-Enhanced Fluorescence In Situ Hybridization.
Authors: Wang, Chenglong and Liu, Siyuan and Wang, Ziquan and Wang, Meng and Pang, Huimin and Liu, Yingying and Chang, Haiyan and Sui, Zhiwei
Journal: Analytical chemistry (2024)
Research Note: Detection of Campylobacter spp. in chicken meat using culture methods and quantitative PCR with propidium monoazide.
Authors: Okada, Ayaka and Tsuchida, Mizuki and Aoyagi, Kazuha and Yoshino, Ayaka and Rahman, Md Matiur and Inoshima, Yasuo
Journal: Poultry science (2023): 102883
Propidium Monoazide-Treated, Cell-Direct, Quantitative PCR for Detecting Viable Chloramphenicol-Resistant Escherichia coli and Corynebacterium glutamicum Cells.
Authors: Qin, Yang and Qu, Bo and Lee, Bumkyu
Journal: Genes (2023)
Viability and removal assessment of Escherichia coli and Salmonella spp. by real-time PCR with propidium monoazide in the hygienization of sewage sludge using three anaerobic processes.
Authors: Flores-Ramírez, A and Ortega-Cuenca, J and Cuetero-Martínez, Y and de Los Cobos, D and Noyola, A
Journal: Waste management (New York, N.Y.) (2023): 254-262
Page updated on April 15, 2025

Ordering information

Price
Unit size
1 mg
5 mg
Catalog Number
1758317584
Quantity
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Additional ordering information

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Physical properties

Molecular weight

1178.51

Solvent

DMSO

Spectral properties

Excitation (nm)

536

Emission (nm)

620

Storage, safety and handling

H-phraseH303, H313, H333
Hazard symbolXN
Intended useResearch Use Only (RUO)
R-phraseR20, R21, R22

Storage

Freeze (< -15 °C); Minimize light exposure

Platform

Fluorescence microscope

ExcitationTexas Red filter set
EmissionTexas Red filter set
Recommended plateBlack wall, clear bottom
Image of live and dead HeLa cells stained with propidium iodide (PI) and PI Brite™ at similar concentrations and analyzed by fluorescence microscopy using a Cy3/TRITC filter set.
Image of live and dead HeLa cells stained with propidium iodide (PI) and PI Brite™ at similar concentrations and analyzed by fluorescence microscopy using a Cy3/TRITC filter set.
Image of live and dead HeLa cells stained with propidium iodide (PI) and PI Brite™ at similar concentrations and analyzed by fluorescence microscopy using a Cy3/TRITC filter set.
Live and dead cells stained with PI Brite™ and Propidium Iodide (PI). Jurkat cells were stained with PI and PI Brite™ at similar concentrations and then analyzed by flow cytometry. PI Brite™ (Red) and PI (Blue) stained cells were distinguished in the PE channel.
Gallery Image 3