iFluor® 860 Styramide *IR Fluorescence Imaging*

1. Fix/permeabilize/block cells or tissue.

2. Add primary antibody in blocking buffer.

3. Add HRP-conjugated secondary antibody.

4. Prepare Styramide™ working solution and apply in cells or tissue for 5-10 minutes at room temperature.

Unless otherwise noted, all unused stock solutions should be divided into single-use aliquots and stored at -20 °C after preparation. Avoid repeated freeze-thaw cycles

1. Add 100 µL of DMSO into the vial of iFluor® dye-labeled Styramide™ conjugate to make 100X Styramide™ stock solution.

   Note: Make single-use aliquots, and store unused 100X stock solution at 2-8 °C in a dark place and avoid repeat freeze-thaw cycles.

1. Add 10 µL of 3% hydrogen peroxide (not provided) to 90 µL of ddH₂O.

   Note: Prepare the 100X H₂O₂ solution fresh on the day of use.

1. Every 1 mL of Reaction Buffer requires 10 µL of Styramide™ stock solution and 10 µL of H₂O₂ stock solution.

   Note: The Styramide™ provided is enough for 100 tests based on 100 µL of Styramide™ working solution needed per coverslip or per well in a 96-well microplate.

   Note: The Styramide™ working solution must be used within 2 hours after preparation and avoid direct exposure to light.

1. Make appropriate concentration of secondary antibody-HRP working solution as per the manufacturer's recommendations.

This protocol is applicable for both cells and tissues staining.

1. Fix the cells or tissue with 3.7% formaldehyde or paraformaldehyde, in PBS at room temperature for 20 minutes.

2. Rinse the cells or tissue with PBS twice.

3. Permeabilize the cells with 0.1% Triton X-100 solution for 1-5 minutes at room temperature.

4. Rinse the cells or tissue with PBS twice.

Deparaffinize and dehydrate the tissue according to your standard IHC protocols. Perform antigen retrieval with the preferred specific solution/protocol as needed. A protocol can be found at:

https://www.aatbio.com/resources/guides/paraffin-embedded-tissue-immunohistochemistry-protocol.html

1. Optional: Quench endogenous peroxidase activity by incubating cell or tissue sample in peroxidase quenching solution (such as 3% hydrogen peroxide) for 10 minutes. Rinse with PBS twice at room temperature.

2. Optional: If using HRP-conjugated streptavidin, it is advisable to block endogenous biotins with a biotin blocking buffer.

3. Block with preferred blocking solution (such as PBS with 1% BSA) for 30 minutes at 4 °C.

4. Remove blocking solution and add primary antibody diluted in recommended antibody diluent for 60 minutes at room temperature or overnight at 4 °C.

5. Wash with PBS three times for 5 minutes each.

6. Apply 100 µL of secondary antibody-HRP working solution to each sample and incubate for 60 minutes at room temperature.

   Note: Incubation time and concentration can be varied depending on the signal intensity.

7. Wash with PBS three times for 5 minutes each.

1. Prepare and apply 100 µL of Styramide™ working solution to each sample and incubate for 5-10 minutes at room temperature.

   Note: If you observe a non-specific signal, you can shorten the incubation time with Styramide. You should optimize the incubation period using positive and negative control samples at various incubation time points. Or you can use a lower concentration of Styramide in the working solution.

2. Rinse with PBS three times.

1. Counterstain the cell or tissue samples as needed. AAT provides a series of nucleus counterstain reagents as listed in Table 1. Follow the instruction provided with the reagents.

2. Mount the coverslip using a mounting medium with anti-fading properties.

   Note: To ensure optimal results, it is recommended to use either ReadiUse™ microscope mounting solution (Cat. 20009) or FluoroQuest™ TSA/PSA Antifade Mounting Medium *Optimized for Tyramide and Styramide Imaging* (Cat. 44890) instead of Vectashield® mounting media. There are instances where Vectashield® mounting media may not be suitable for certain TSA/PSA conjugates.

3. Use the appropriate filter set to visualize the signal from the Styramide labeling.

Table 1. Products recommended for nucleus counterstain.