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AAT Bioquest

CDPI3-CPG [Minor Groove Binder CPG] *500A*

Minor Groove Binder (MGB) molecules selectively bind to the minor groove of a DNA molecule, the shallow furrow in the DNA helix. MGB-labeled oligonucleotides form stable hybrid complexes with complementary DNA and RNA target sequences. Dihydropyrroloindole tripeptide (CDPI3), the analogs of natural product CC-1065, have been shown to arrest sequence-specific primer extension on single-stranded DNA when linked to oligonucleotides. CDPI3-containing oligonucleotides increases both the specificity and the strength of hybridization, thus enhancing the stability of DNA duplexes. The addition of MGB molecules to DNA probes allows the design of shorter hybridization probes useful for molecular diagnostics, e.g., quantitative PCR based assays. Several designs are possible, including Taqman MGB probes. AAT Bioquest offer this CPG support for conveniently adding an MGB moiety to the 3’-terminals of oligos. We also offer MGB phosphoramidite for labeling 5' terminus with an MGB moiety.

References

View all 50 references: Citation Explorer
Capecitabine as a minor groove binder of DNA: molecular docking, molecular dynamics, and multi-spectroscopic studies.
Authors: Zhang, Shuangshuang and Yang, Hongqin and Zhao, Ludan and Gan, Ruixue and Tang, Peixiao and Sun, Qiaomei and Xiong, Xinnuo and Li, Hui
Journal: Journal of biomolecular structure & dynamics (2019): 1451-1463
Minor groove binder modification of widely used TaqMan hydrolysis probe for detection of dengue virus reduces risk of false-negative real-time PCR results for serotype 4.
Authors: Gray, Eleanor R and Heaney, Judith and Ferns, R Bridget and Sequeira, Patricia C and Nastouli, Eleni and Garson, Jeremy A
Journal: Journal of virological methods (2019): 17-23
A rapid minor groove binder PCR method for distinguishing the vaccine strain Brucella abortus 104M.
Authors: Nan, Wenlong and Qin, Lide and Wang, Yong and Zhang, Yueyong and Tan, Pengfei and Chen, Yuqi and Mao, Kairong and Chen, Yiping
Journal: BMC veterinary research (2018): 27
Influence of Divalent Counterions on the Dynamics in DNA as Probed by Using a Minor-Groove Binder.
Authors: Paul, Sneha and Ahmed, Tasnim and Samanta, Anunay
Journal: Chemphyschem : a European journal of chemical physics and physical chemistry (2017): 2058-2064
Origin of DNA-Induced Circular Dichroism in a Minor-Groove Binder.
Authors: Holmgaard List, Nanna and Knoops, Jérémie and Rubio-Magnieto, Jenifer and Idé, Julien and Beljonne, David and Norman, Patrick and Surin, Mathieu and Linares, Mathieu
Journal: Journal of the American Chemical Society (2017): 14947-14953
Page updated on December 17, 2024

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Catalog Number6900
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Physical properties

Molecular weight

N/A

Solvent

MeCN

Storage, safety and handling

H-phraseH303, H313, H333
Hazard symbolXN
Intended useResearch Use Only (RUO)
R-phraseR20, R21, R22

Storage

Freeze (< -15 °C); Minimize light exposure
UNSPSC12171501
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