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3'-O-Azidomethyl-dTTP

3'-O-Azidomethyl-dTTP is one of the four essential dNTPs (A, C, G, T) that are used for the DNA sequencing by synthesis (SBS). DNA sequencing is a fundamental tool in biological and medical research. A variety of DNA sequencing methods have been developed in recent years. Currently, the dominant method is sequencing by synthesis (SBS), an approach that determines DNA sequences during the polymerase reaction. The most widely used high-throughput SBS technology uses cleavable fluorescent reversible nucleotide terminator sequencing chemistry. The reversible terminator sequencing chemistry is based on the principle: each of the four nucleotides (A, C, G, T) is modified by attaching a unique cleavable fluorophore to the base and capping the 3′-OH group with a small reversible chemical moiety so that they are still recognized by DNA polymerase as substrates. The fluorescence based SBS suffers limited read length since the current cleavable fluorescent dNTPs used in SBS leave a large fluorescence tag on the base of the growing DNA strand. Conceptually, the much smaller azidomethyl group on the dNTPs may be used as a tag for sequencing. Due to the small size of the azido label, the 3′-O-azidomethyl-dNTPs are efficient substrates for the DNA polymerase. In the SBS cycles, the natural nucleotides are restored after each incorporation and cleavage, producing a growing DNA strand that bears no modifications and will not impede further polymerase reactions.
References
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Structural analysis of the dNTP triphosphohydrolase PA1124 from Pseudomonas aeruginosa.
Authors: Oh, Han Byeol and Lee, Kang-Cheon and Park, Sun Cheol and Song, Wan Seok and Yoon, Sung-Il
Journal: Biochemical and biophysical research communications (2022): 78-84
The Role of Intestinal Microbial Metabolites in the Immunity of Equine Animals Infected With Horse Botflies.
Authors: Hu, Dini and Tang, Yujun and Wang, Chen and Qi, Yingjie and Ente, Make and Li, Xuefeng and Zhang, Dong and Li, Kai and Chu, Hongjun
Journal: Frontiers in veterinary science (2022): 832062
Towards the enzymatic synthesis of phosphorothioate containing LNA oligonucleotides.
Authors: Flamme, Marie and Hanlon, Steven and Iding, Hans and Puentener, Kurt and Sladojevich, Filippo and Hollenstein, Marcel
Journal: Bioorganic & medicinal chemistry letters (2021): 128242
Upregulation of Thymidylate Synthase Induces Pemetrexed Resistance in Malignant Pleural Mesothelioma.
Authors: Sato, Yuzo and Tomita, Masaru and Soga, Tomoyoshi and Ochiai, Atsushi and Makinoshima, Hideki
Journal: Frontiers in pharmacology (2021): 718675
Feline thymidine kinase 1: molecular characterization and evaluation of its serum form as a diagnostic biomarker.
Authors: Wang, Liya and Sharif, Hanan and Saellström, Sara and Rönnberg, Henrik and Eriksson, Staffan
Journal: BMC veterinary research (2021): 316
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Physical properties
Molecular weight537.21
SolventWater
Storage, safety and handling
H-phraseH303, H313, H333
Hazard symbolXN
Intended useResearch Use Only (RUO)
R-phraseR20, R21, R22
StorageFreeze (< -15 °C); Minimize light exposure
CAS1048021-85-7
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